RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA797475", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 2 ✖

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJNA797475 · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18633070 18633070 PRJNA797475_P_NODE_8955_length_347_cov_1.470803_g8856_i0 PRJNA797475 8955 347 1.470803 5.10368641 uncultured delta proteobacterium 34034 Bacteria Bacteria 147 1.47e-30   NTclustered gi|2874253999|emb|OY970324.1| 34034 g8856 i0 74.928 2.39481268011527 347 73 98 12 1 341 82850 83188 MAG: uncultured delta proteobacterium isolate MFD05502.bin.1.132 genome assembly, chromosome: 1 blastn 831 147 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
30852843 30852843 PRJNA797475_P_NODE_21754_length_251_cov_0.865169_g21655_i0 PRJNA797475 21754 251 0.865169 2.17157419 Bacteria 2 Bacteria Bacteria 57 4e-7   NR OGQ89419.1 1797895 g21655 i0 36.8 1.81673306772908 76 47 90.8 1 234 7 1185 1259 OGQ89419.1 MAG: hypothetical protein A2289_07420 [Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15] diamond 456 57 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;