RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA797475", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA797475 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23734088 23734088 PRJNA797475_P_NODE_12399_length_303_cov_1.339130_g12300_i0 PRJNA797475 12399 303 1.33913 4.0575639 Rhabdochlamydiaceae bacterium 2047756 Bacteria Bacteria 127 9.64e-36   NR HNA62975.1 2047756 g12300 i0 95.5 0.653465346534653 66 3 65.3 0 276 79 4 69 HNA62975.1 hypothetical protein [Rhabdochlamydiaceae bacterium] diamond 198 127 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae   Rhabdochlamydiaceae bacterium
32425124 32425124 PRJNA797475_P_NODE_18779_length_264_cov_1.534031_g18680_i0 PRJNA797475 18779 264 1.534031 4.04984184 Chlamydiales bacterium 2047757 Bacteria Bacteria 128 8.909999999999998e-35   NR HSX38793.1 2047757 g18680 i0 71.3 3.95454545454545 87 25 98.9 0 3 263 44 130 HSX38793.1 YebC/PmpR family DNA-binding transcriptional regulator [Chlamydiales bacterium] diamond 1044 128 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
32645846 32645846 PRJNA797475_P_NODE_13080_length_296_cov_1.663677_g12981_i0 PRJNA797475 13080 296 1.663677 4.92448392 Simkania sp. 34094 Bacteria Bacteria 129 1.2e-34   NR MCB1084310.1 34094 g12981 i0 79.7 0.800675675675676 79 16 80.1 0 294 58 1 79 MCB1084310.1 hypothetical protein [Simkania sp.] diamond 237 129 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae Simkania Simkania sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;