RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA797475", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 4 ✖

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA797475 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10985303 10985303 PRJNA797475_P_NODE_14989_length_283_cov_6.666667_g14890_i0 PRJNA797475 14989 283 6.666667 18.86666761 Vermamoeba sp. 1972851 Tubulinea other_Eukaryota 438 1.7199999999999995e-118   NTclustered gi|2651357782|gb|PP174298.1| 1972851 g14890 i0 94.681 37.8904593639576 282 15 99 0 1 282 3931 4212 Vermamoeba sp. isolate 22 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 10723 438 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba sp.
10985426 10985426 PRJNA797475_P_NODE_2549_length_611_cov_1.500000_g2451_i0 PRJNA797475 2549 611 1.5 9.165 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 1074 0   NTclustered gi|300078496|gb|GU001158.1| 5778 g2451 i0 98.363 45.8837970540098 611 10 100 0 1 611 2873 2263 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 28035 1074 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
21183825 21183825 PRJNA797475_P_NODE_20777_length_253_cov_2.438889_g20678_i0 PRJNA797475 20777 253 2.438889 6.17038917 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 388 1.5399999999999998e-103   NTclustered gi|909719645|gb|KT185625.1| 5778 g20678 i0 94.488 1.78260869565217 254 10 99 4 2 253 7099 6848 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 451 388 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
22458518 22458518 PRJNA797475_P_NODE_21478_length_251_cov_0.865169_g21379_i0 PRJNA797475 21478 251 0.865169 2.17157419 Lesquereusia modesta 1260108 Tubulinea other_Eukaryota 136 1.0599999999999998e-37   NR AFX73094.1 1260108 g21379 i0 74.4 3.93227091633466 82 21 98 0 251 6 21 102 AFX73094.1 elongation factor 2 alpha, partial [Lesquereusia modesta] diamond 987 136 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Lesquereusiidae Lesquereusia Lesquereusia modesta

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;