RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA796975", tax_phylum = "Gemmatimonadota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 6 ✖

tax_phylum 1

  • Gemmatimonadota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA796975 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
781197 781197 PRJNA796975_S_NODE_2781_length_260_cov_1.440758_g2704_i0 PRJNA796975 2781 260 1.440758 3.7459708 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 122 3.3499999999999996e-30   NR HVX38494.1 2026741 g2704 i0 66.7 1.00384615384615 87 28 99.2 1 2 259 2234 2320 HVX38494.1 amino acid adenylation domain-containing protein [Gemmatimonadaceae bacterium] diamond 261 122 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
14809699 14809699 PRJNA796975_S_NODE_12732_length_164_cov_0.886957_g12655_i0 PRJNA796975 12732 164 0.886957 1.45460948 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 119 1.33e-22   NTclustered gi|2874253978|emb|OY970303.1| 412054 g12655 i0 87.379 77.7743902439024 103 13 94 0 56 158 465150 465048 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 12755 119 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
26936372 26936372 PRJNA796975_S_NODE_6802_length_188_cov_0.978417_g6725_i0 PRJNA796975 6802 188 0.978417 1.83942396 FCB group 1783270 Bacteria Bacteria 98.2 1.02e-22   NR MEP6834251.1 1962908 g6725 i0 67.7 7.91489361702128 62 20 98.9 0 187 2 193 254 MEP6834251.1 MBOAT family protein [Gemmatimonas sp.] diamond 1488 99 0.991919191919192 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas sp.
27906477 27906477 PRJNA796975_S_NODE_9505_length_167_cov_0.864407_g9428_i0 PRJNA796975 9505 167 0.864407 1.44355969 Longimicrobium sp. 2029185 Bacteria Bacteria 108 6.0499999999999996e-28   NR HEX2076924.1 2029185 g9428 i0 80 1.97604790419162 55 11 98.8 0 166 2 104 158 HEX2076924.1 hypothetical protein [Longimicrobium sp.] diamond 330 108 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
29801063 29801063 PRJNA796975_S_NODE_14771_length_161_cov_1.312500_g14694_i0 PRJNA796975 14771 161 1.3125 2.113125 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 48.1 1.53e-4   NR HVX40327.1 2026741 g14694 i0 52.3 1.77018633540373 44 21 82 0 3 134 118 161 HVX40327.1 beta-ketoacyl synthase N-terminal-like domain-containing protein [Gemmatimonadaceae bacterium] diamond 285 48.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
32803529 32803529 PRJNA796975_S_NODE_3700_length_232_cov_1.650273_g3623_i0 PRJNA796975 3700 232 1.650273 3.82863336 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 60.5 5.8e-9   NR MCR4339343.1 2026741 g3623 i0 48.3 0.775862068965517 60 31 77.6 0 182 3 93 152 MCR4339343.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 180 60.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;