RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA796975", tax_phylum = "Campylobacterota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA796975 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12696525 12696525 PRJNA796975_S_NODE_8730_length_171_cov_1.672131_g8653_i0 PRJNA796975 8730 171 1.672131 2.85934401 Bacteria 2 Bacteria Bacteria 316 4.6e-82   NTclustered gi|2323232558|gb|CP109813.1| 195 g8653 i0 100 100 171 0 100 0 1 171 556438 556608 Campylobacter coli strain CC20JX12 chromosome, complete genome blastn 17100 316 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter coli
30085380 30085380 PRJNA796975_S_NODE_6392_length_192_cov_1.041958_g6315_i0 PRJNA796975 6392 192 1.041958 2.00055936 Desulfurellales bacterium 2482794 Bacteria Bacteria 90.5 9.95e-21   NR TXH49210.1 2482794 g6315 i0 64.1 1 64 23 100 0 1 192 80 143 TXH49210.1 MAG: helix-hairpin-helix domain-containing protein [Desulfurellales bacterium] diamond 192 90.5 1 Bacteria   Pseudomonadati Campylobacterota Desulfurellia Desulfurellales     Desulfurellales bacterium
31918829 31918829 PRJNA796975_S_NODE_4157_length_223_cov_1.172414_g4080_i0 PRJNA796975 4157 223 1.172414 2.61448322 Helicobacter pylori 210 Bacteria Bacteria 85.1 1.04e-19   NR GAA8683376.1 210 g4080 i0 91.7 0.645739910313901 48 4 64.6 0 221 78 7 54 GAA8683376.1 hypothetical protein Kyoto145A_0600 [Helicobacter pylori] diamond 144 85.1 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;