RNAquarium Metadata Server
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contig_metadata

10 rows where bioproject = "PRJNA796975" and tax_phylum = "Bdellovibrionota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 10 ✖

tax_kingdom 1

bioproject 1

  • PRJNA796975 · 10 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13534857 13534857 PRJNA796975_S_NODE_13891_length_162_cov_0.902655_g13814_i0 PRJNA796975 13891 162 0.902655 1.4623011 Pseudobdellovibrio exovorus 453816 Bacteria Bacteria 187 3.5399999999999992e-43   NTclustered gi|469929247|gb|CP003537.1| 1184267 g13814 i0 89.262 0.919753086419753 149 16 92 0 1 149 1832795 1832943 Bdellovibrio exovorus JSS, complete genome blastn 149 187 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio exovorus
26673704 26673704 PRJNA796975_S_NODE_12061_length_164_cov_0.886957_g11984_i0 PRJNA796975 12061 164 0.886957 1.45460948 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 61.6 2.75e-9   NR MCM2283058.1 2026715 g11984 i0 44.4 0.98780487804878 54 30 98.8 0 2 163 97 150 MCM2283058.1 ABC transporter substrate-binding protein [Pseudobdellovibrionaceae bacterium] diamond 162 61.6 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
27496348 27496348 PRJNA796975_S_NODE_12063_length_164_cov_0.886957_g11986_i0 PRJNA796975 12063 164 0.886957 1.45460948 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 45.1 0.00108   NR HMN66939.1 2053517 g11986 i0 60.5 0.786585365853659 43 17 78.7 0 34 162 1 43 HMN66939.1 biopolymer transporter ExbD [Bdellovibrionales bacterium] diamond 129 45.1 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
28064588 28064588 PRJNA796975_S_NODE_13345_length_163_cov_0.894737_g13268_i0 PRJNA796975 13345 163 0.894737 1.45842131 Micavibrio sp. 2024841 Bacteria Bacteria 83.6 5.13e-17   NR HEY0901126.1 2024841 g13268 i0 81.5 0.993865030674847 54 10 99.4 0 2 163 163 216 HEY0901126.1 flagellar hook-length control protein FliK [Micavibrio sp.] diamond 162 83.6 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio sp.
28515820 28515820 PRJNA796975_S_NODE_12627_length_164_cov_0.886957_g12550_i0 PRJNA796975 12627 164 0.886957 1.45460948 PVC group 1783257 Bacteria Bacteria 42.7 0.0129   NR OFZ30400.1 1797389 g12550 i0 73.1 2.78048780487805 26 7 47.6 0 3 80 562 587 OFZ30400.1 MAG: arginine--tRNA ligase [Bdellovibrionales bacterium RIFCSPHIGHO2_01_FULL_40_29] diamond 456 42.7 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium RIFCSPHIGHO2_01_FULL_40_29
29106649 29106649 PRJNA796975_S_NODE_12048_length_164_cov_0.886957_g11971_i0 PRJNA796975 12048 164 0.886957 1.45460948 Bdellovibrio bacteriovorus 959 Bacteria Bacteria 50.4 2.41e-5   NR WP_374032716.1 959 g11971 i0 45.3 1.9390243902439 53 29 97 0 161 3 196 248 WP_374032716.1 hypothetical protein [Bdellovibrio bacteriovorus] diamond 318 50.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
29264227 29264227 PRJNA796975_S_NODE_9749_length_167_cov_0.864407_g9672_i0 PRJNA796975 9749 167 0.864407 1.44355969 Micavibrio aeruginosavorus 349221 Bacteria Bacteria 112 1.8000000000000002e-28   NR PZP57114.1 349221 g9672 i0 98.2 3.95209580838323 55 1 98.8 0 165 1 50 104 PZP57114.1 MAG: cobyrinic acid a,c-diamide synthase [Micavibrio aeruginosavorus] diamond 660 112 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus
30085379 30085379 PRJNA796975_S_NODE_11112_length_165_cov_1.068966_g11035_i0 PRJNA796975 11112 165 1.068966 1.7637939 Bacteriovoracia bacterium 3058048 Bacteria Bacteria 101 4.44e-24   NR MFP5457423.1 3058048 g11035 i0 96.3 1.96363636363636 54 2 98.2 0 2 163 240 293 MFP5457423.1 hypothetical protein [Bacteriovoracia bacterium] diamond 324 101 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia       Bacteriovoracia bacterium
31136955 31136955 PRJNA796975_S_NODE_10075_length_167_cov_0.864407_g9998_i0 PRJNA796975 10075 167 0.864407 1.44355969 Bdellovibrio 958 Bacteria Bacteria 106 1.05e-25   NR WP_015089889.1 959 g9998 i0 87.3 4.90419161676647 55 7 98.8 0 1 165 174 228 WP_015089889.1 metallophosphoesterase [Bdellovibrio bacteriovorus] diamond 819 106 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
32897890 32897890 PRJNA796975_S_NODE_14940_length_161_cov_0.910714_g14863_i0 PRJNA796975 14940 161 0.910714 1.46624954 Micavibrio aeruginosavorus 349221 Bacteria Bacteria 77.4 3.95e-15   NR PZO83218.1 349221 g14863 i0 100 0.68944099378882 37 0 68.9 0 113 3 1 37 PZO83218.1 MAG: glucokinase [Micavibrio aeruginosavorus] diamond 111 77.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;