RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA796975", tax_kingdom = "Pseudomonadati" and tax_phylum = "Nitrospirota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA796975 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29959099 29959099 PRJNA796975_S_NODE_5351_length_204_cov_1.316129_g5274_i0 PRJNA796975 5351 204 1.316129 2.68490316 Nitrospiraceae bacterium 2026770 Bacteria Bacteria 88.2 2.15e-18   NR HWI69880.1 2026770 g5274 i0 67.2 2.92647058823529 67 22 98.5 0 203 3 437 503 HWI69880.1 hypothetical protein [Nitrospiraceae bacterium] diamond 597 88.2 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae   Nitrospiraceae bacterium
31222731 31222731 PRJNA796975_S_NODE_4935_length_210_cov_1.434783_g4858_i0 PRJNA796975 4935 210 1.434783 3.0130443 Nitrospira sp. 70125 Bacteria Bacteria 50.1 6.51e-5   NR HKU52714.1 70125 g4858 i0 75 0.4 28 7 40 0 84 1 9 36 HKU52714.1 DNA polymerase [Nitrospira sp.] diamond 84 50.1 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;