RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA796975", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA796975 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29390860 29390860 PRJNA796975_S_NODE_11689_length_165_cov_0.879310_g11612_i0 PRJNA796975 11689 165 0.87931 1.4508615 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 53.1 2.45e-6   NR MBV9658300.1 2026799 g11612 i0 50.9 2.03636363636364 57 25 98.2 1 2 163 111 167 MBV9658300.1 right-handed parallel beta-helix repeat-containing protein [Verrucomicrobiota bacterium] diamond 336 53.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31823765 31823765 PRJNA796975_S_NODE_12157_length_164_cov_0.886957_g12080_i0 PRJNA796975 12157 164 0.886957 1.45460948 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 69.7 2.81e-12   NR MES2707562.1 2026799 g12080 i0 72.2 0.98780487804878 54 15 98.8 0 2 163 180 233 MES2707562.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 162 69.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;