RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

29 rows where bioproject = "PRJNA796753" and tax_kingdom = "Methanobacteriati"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_kingdom 1

  • Methanobacteriati · 29 ✖

bioproject 1

  • PRJNA796753 · 29 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15245201 15245201 PRJNA796753_P_NODE_6212_length_543_cov_2.165957_g5904_i0 PRJNA796753 6212 543 2.165957 11.76114651 Methanothrix 2222 Archaea Archaea 987 0   NTclustered gi|507148322|ref|NR_103125.1| 2223 g5904 i0 99.448 16.427255985267 543 3 100 0 1 543 726 184 Methanosaeta concilii strain GP6 23S ribosomal RNA gene, complete sequence blastn 8920 987 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix soehngenii
16083221 16083221 PRJNA796753_P_NODE_32053_length_273_cov_1.540000_g31741_i0 PRJNA796753 32053 273 1.54 4.2042 Haloferax sp. YSSS75 3388564 Archaea Archaea 58.4 5.39e-4   NTclustered gi|2890410414|gb|CP177206.1| 3388564 g31741 i0 97.059 0.124542124542125 34 1 12 0 90 123 360722 360755 Haloferax sp. YSSS75 chromosome, complete genome blastn 34 58.4 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloferax Haloferax sp. YSSS75
18632069 18632069 PRJNA796753_P_NODE_14275_length_376_cov_0.910891_g13963_i0 PRJNA796753 14275 376 0.910891 3.42495016 root 1 Root_unresolved Root_unresolved 194 1.5699999999999998e-57   NR MBE6527559.1 1906666 g13963 i0 71.2 11.968085106383 125 35 98.9 1 374 3 146 270 MBE6527559.1 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme [Thermoplasmata archaeon] diamond 4500 194 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon
19907570 19907570 PRJNA796753_P_NODE_416_length_1624_cov_2.987750_g333_i0 PRJNA796753 416 1624 2.98775 48.52106 Halorutilales archaeon Cl-col2-1 3242703 Archaea Archaea 54.7 0.046   NTclustered gi|2801083086|gb|CP169074.1| 3242703 g333 i0 100 0.0178571428571429 29 0 2 0 202 230 912412 912384 Halorutilales archaeon Cl-col2-1 chromosome, complete genome blastn 29 54.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halorutilales     Halorutilales archaeon Cl-col2-1
22894298 22894298 PRJNA796753_P_NODE_25478_length_297_cov_2.790179_g25166_i0 PRJNA796753 25478 297 2.790179 8.28683163 root 1 Root_unresolved Root_unresolved 278 4.18e-70   NTclustered gi|436492|gb|U00707.1|PSU00707 33866 g25166 i0 100 7.53872053872054 150 0 100 0 1 150 3650 3799 Pyrococcus sp. Deep Vent DNA polymerase precursor gene, complete cds blastn 2239 278 1 Archaea   Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Pyrococcus Pyrococcus sp.
26873421 26873421 PRJNA796753_P_NODE_10781_length_423_cov_1.705714_g10469_i0 PRJNA796753 10781 423 1.705714 7.21517022 Archaea 2157 Archaea Archaea 84.3 7.29e-16   NR RMG30411.1 2026739 g10469 i0 52.2 0.950354609929078 69 33 48.9 0 401 195 468 536 RMG30411.1 MAG: hypothetical protein D6732_16280 [Methanobacteriota archaeon] diamond 402 84.3 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon
27053960 27053960 PRJNA796753_P_NODE_40682_length_250_cov_0.870056_g40370_i0 PRJNA796753 40682 250 0.870056 2.17514 uncultured Methanobrevibacter sp. 253161 Archaea Archaea 42.4 0.0256   NR WP_296848038.1 253161 g40370 i0 33.8 0.888 74 48 87.6 1 26 244 61 134 WP_296848038.1 hypothetical protein [uncultured Methanobrevibacter sp.] diamond 222 42.4 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter uncultured Methanobrevibacter sp.
27536971 27536971 PRJNA796753_P_NODE_27003_length_290_cov_1.230415_g26691_i0 PRJNA796753 27003 290 1.230415 3.5682035 root 1 Root_unresolved Root_unresolved 47.8 0.00118   NR WP_019178328.1 1080712 g26691 i0 30.3 1.37586206896552 66 46 68.3 0 202 5 521 586 WP_019178328.1 RHS repeat domain-containing protein [Methanomassiliicoccus luminyensis] diamond 399 48.1 0.993762993762994 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales Methanomassiliicoccaceae Methanomassiliicoccus Methanomassiliicoccus luminyensis
28348733 28348733 PRJNA796753_P_NODE_39666_length_251_cov_0.865169_g39354_i0 PRJNA796753 39666 251 0.865169 2.17157419 Thermoplasmata archaeon 1906666 Archaea Archaea 50.8 5.96e-5   NR MCK4456249.1 1906666 g39354 i0 42 1.88844621513944 69 36 77.7 1 248 54 1760 1828 MCK4456249.1 FG-GAP repeat protein [Thermoplasmata archaeon] diamond 474 50.8 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon
28475072 28475072 PRJNA796753_P_NODE_22346_length_315_cov_1.272727_g22034_i0 PRJNA796753 22346 315 1.272727 4.00909005 Thermoplasmata archaeon 1906666 Archaea Archaea 51.2 9.3e-5   NR MEM4293694.1 1906666 g22034 i0 34.1 0.866666666666667 91 56 84.8 3 20 286 1158 1246 MEM4293694.1 kelch repeat-containing protein [Thermoplasmata archaeon] diamond 273 51.2 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon
28569694 28569694 PRJNA796753_P_NODE_37067_length_256_cov_1.683060_g36755_i0 PRJNA796753 37067 256 1.68306 4.3086336 Halarchaeum acidiphilum 489138 Archaea Archaea 43.9 0.007   NR WP_020222420.1 489138 g36755 i0 40.9 0.7734375 66 36 73.8 1 191 3 8 73 WP_020222420.1 DUF4129 domain-containing protein [Halarchaeum acidiphilum] diamond 198 43.9 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halarchaeum Halarchaeum acidiphilum
28790654 28790654 PRJNA796753_P_NODE_5487_length_576_cov_1.401590_g5179_i0 PRJNA796753 5487 576 1.40159 8.0731584 uncultured Methanobrevibacter sp. 253161 Archaea Archaea 46.6 0.0376   NR WP_298501364.1 253161 g5179 i0 25.2 0.744791666666667 143 96 71.9 4 416 3 18 154 WP_298501364.1 right-handed parallel beta-helix repeat-containing protein, partial [uncultured Methanobrevibacter sp.] diamond 429 46.6 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter uncultured Methanobrevibacter sp.
28853751 28853751 PRJNA796753_P_NODE_54948_length_235_cov_3.135802_g54636_i0 PRJNA796753 54948 235 3.135802 7.3691347 Haloplanus sp. CK5-1 2949994 Archaea Archaea 42 0.0176   NR WP_338740382.1 2949994 g54636 i0 48.9 0.574468085106383 45 19 52.3 1 74 196 11 55 WP_338740382.1 hypothetical protein [Haloplanus sp. CK5-1] diamond 135 42 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloplanus Haloplanus salilacus
29147584 29147584 PRJNA796753_P_NODE_36369_length_259_cov_1.241935_g36057_i0 PRJNA796753 36369 259 1.241935 3.21661165 root 1 Root_unresolved Root_unresolved 101 4.48e-24   NR WP_071907853.1 118062 g36057 i0 56.4 5.45559845559846 78 34 90.3 0 22 255 65 142 WP_071907853.1 DODA-type extradiol aromatic ring-opening family dioxygenase [Methanobacterium congolense] diamond 1413 101 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium congolense
29201356 29201356 PRJNA796753_P_NODE_10509_length_428_cov_1.301408_g10197_i0 PRJNA796753 10509 428 1.301408 5.57002624 Candidatus Sysuiplasma superficiale 2823368 Archaea Archaea 52.4 5.14e-5   NR MBX8643925.1 2823368 g10197 i0 28 1.71028037383178 132 84 84.8 3 408 46 7 138 MBX8643925.1 hypothetical protein [Candidatus Sysuiplasma superficiale] diamond 732 52.4 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Candidatus Sysuiplasmatales Candidatus Sysuiplasmataceae Candidatus Sysuiplasma Candidatus Sysuiplasma superficiale
29201357 29201357 PRJNA796753_P_NODE_11589_length_410_cov_0.964392_g11277_i0 PRJNA796753 11589 410 0.964392 3.9540072 Methanoregulaceae archaeon 2485498 Archaea Archaea 44.7 0.0248   NR HRY75955.1 2485498 g11277 i0 47.1 0.248780487804878 34 18 24.9 0 216 115 53 86 HRY75955.1 isoprenylcysteine carboxylmethyltransferase family protein [Methanoregulaceae archaeon] diamond 102 44.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae   Methanoregulaceae archaeon
29368288 29368288 PRJNA796753_P_NODE_53949_length_241_cov_0.916667_g53637_i0 PRJNA796753 53949 241 0.916667 2.20916747 root 1 Root_unresolved Root_unresolved 82 5.19e-16   NR WP_321508096.1 1005933 g53637 i0 55 3.95850622406639 80 27 99.6 2 2 241 144 214 WP_321508096.1 carboxylesterase/lipase family protein [uncultured Methanoregula sp.] diamond 954 82.8 0.990338164251208 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula uncultured Methanoregula sp.
29810123 29810123 PRJNA796753_P_NODE_18111_length_342_cov_1.133829_g17799_i0 PRJNA796753 18111 342 1.133829 3.87769518 Archaea 2157 Archaea Archaea 170 7.5e-50   NR RMG33908.1 2026739 g17799 i0 72.8 3 114 31 100 0 1 342 74 187 RMG33908.1 MAG: ornithine carbamoyltransferase [Methanobacteriota archaeon] diamond 1026 170 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon
29927675 29927675 PRJNA796753_P_NODE_25351_length_298_cov_1.644444_g25039_i0 PRJNA796753 25351 298 1.644444 4.90044312 Theionarchaea archaeon DG-7 2747605 Archaea Archaea 122 5.969999999999998e-32   NR KYK33069.1 1803814 g25039 i0 61.6 0.865771812080537 86 33 86.6 0 277 20 1 86 KYK33069.1 MAG: glyoxal reductase [Theionarchaea archaeon DG-70-1] diamond 258 122 1 Archaea   Methanobacteriati Methanobacteriota Theionarchaea       Theionarchaea archaeon DG-70-1
29968260 29968260 PRJNA796753_P_NODE_51471_length_243_cov_0.905882_g51159_i0 PRJNA796753 51471 243 0.905882 2.20129326 root 1 Root_unresolved Root_unresolved 47 0.00122   NR WP_058739066.1 230361 g51159 i0 40.4 1.53086419753086 57 33 69.1 1 32 199 163 219 WP_058739066.1 Ig-like domain repeat protein [Methanobrevibacter millerae] diamond 372 47.4 0.991561181434599 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter millerae
30148458 30148458 PRJNA796753_P_NODE_41932_length_249_cov_0.875000_g41620_i0 PRJNA796753 41932 249 0.875 2.17875 Saliphagus infecundisoli 1849069 Archaea Archaea 66.6 1.06e-10   NR WP_224829651.1 1849069 g41620 i0 46.3 0.987951807228916 82 43 97.6 1 3 245 146 227 WP_224829651.1 methyltransferase domain-containing protein [Saliphagus infecundisoli] diamond 246 66.6 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Saliphagus Saliphagus infecundisoli
30180172 30180172 PRJNA796753_P_NODE_992_length_1190_cov_3.271262_g833_i0 PRJNA796753 992 1190 3.271262 38.9280178 Methanobacteriota archaeon 2026739 Archaea Archaea 143 4.53e-33   NR RMG31918.1 2026739 g833 i0 29.6 0.852100840336134 338 226 84.2 7 1173 172 676 1005 RMG31918.1 MAG: hypothetical protein D6732_14205 [Methanobacteriota archaeon] diamond 1014 143 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon
31412712 31412712 PRJNA796753_P_NODE_37976_length_253_cov_1.711111_g37664_i0 PRJNA796753 37976 253 1.711111 4.32911083 Methanosphaera sp. 2666342 Archaea Archaea 56.6 5.5e-7   NR MEE3325473.1 2666342 g37664 i0 43.7 2.21739130434783 87 38 93.7 7 250 14 198 281 MEE3325473.1 hypothetical protein [Methanosphaera sp.] diamond 561 56.6 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera sp.
32298835 32298835 PRJNA796753_P_NODE_17339_length_348_cov_0.825455_g17027_i0 PRJNA796753 17339 348 0.825455 2.8725834 Thermoplasmata archaeon 1906666 Archaea Archaea 44.3 0.016   NR RLF55226.1 1906666 g17027 i0 29.9 2.03448275862069 117 63 96.6 3 13 348 14 116 RLF55226.1 MAG: hypothetical protein DRN13_00785 [Thermoplasmata archaeon] diamond 708 44.3 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon
32307916 32307916 PRJNA796753_P_NODE_36779_length_257_cov_1.983696_g36467_i0 PRJNA796753 36779 257 1.983696 5.09809872 Methanobacteriaceae 2159 Archaea Archaea 65.9 3.27e-10   NR WP_292800363.1 66852 g36467 i0 38.8 2.47470817120623 67 40 77 1 15 212 965 1031 WP_292800363.1 hypothetical protein [Methanobrevibacter sp.] diamond 636 66.2 0.995468277945619 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
32330464 32330464 PRJNA796753_P_NODE_36799_length_257_cov_1.673913_g36487_i0 PRJNA796753 36799 257 1.673913 4.30195641 Candidatus Poseidoniaceae archaeon 2666346 Archaea Archaea 43.1 0.0312   NR MDP7374755.1 2666346 g36487 i0 34.9 1.00389105058366 86 44 88.7 2 230 3 289 372 MDP7374755.1 hypothetical protein [Candidatus Poseidoniaceae archaeon] diamond 258 43.1 1 Archaea   Methanobacteriati Thermoplasmatota Candidatus Poseidoniia Candidatus Poseidoniales Candidatus Poseidoniaceae   Candidatus Poseidoniaceae archaeon
32645833 32645833 PRJNA796753_P_NODE_51400_length_243_cov_0.905882_g51088_i0 PRJNA796753 51400 243 0.905882 2.20129326 Methanobrevibacter oralis 66851 Archaea Archaea 42.7 0.0344   NR WP_042694748.1 66851 g51088 i0 62.2 0.45679012345679 37 14 45.7 0 5 115 67 103 WP_042694748.1 SAP domain-containing protein [Methanobrevibacter oralis] diamond 111 42.7 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter oralis
32812573 32812573 PRJNA796753_P_NODE_41460_length_250_cov_0.870056_g41148_i0 PRJNA796753 41460 250 0.870056 2.17514 root 1 Root_unresolved Root_unresolved 80.1 2.87e-15   NR MBU6998517.1 2747605 g41148 i0 50.7 6.624 69 34 82.8 0 235 29 274 342 MBU6998517.1 DUF885 domain-containing protein [Theionarchaea archaeon] diamond 1656 80.1 1 Archaea   Methanobacteriati Methanobacteriota Theionarchaea       Theionarchaea archaeon
32866465 32866465 PRJNA796753_P_NODE_26660_length_291_cov_1.811927_g26348_i0 PRJNA796753 26660 291 1.811927 5.27270757 Methanocellales archaeon 2666334 Archaea Archaea 58.9 2.24e-8   NR MEM2934473.1 2666334 g26348 i0 62.7 0.525773195876289 51 19 52.6 0 247 95 4 54 MEM2934473.1 50S ribosomal protein L19e [Methanocellales archaeon] diamond 153 58.9 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanocellales     Methanocellales archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;