RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA796753", tax_clade = "Sar" and tax_phylum = "Foraminifera"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Foraminifera · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA796753 · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10984675 10984675 PRJNA796753_P_NODE_33409_length_269_cov_1.178571_g33097_i0 PRJNA796753 33409 269 1.178571 3.17035599 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 122 2.18e-32   NR ETO11380.1 46433 g33097 i0 65.2 1.98513011152416 89 27 99.3 1 269 3 36 120 ETO11380.1 malate dehydrogenase [Reticulomyxa filosa] diamond 534 123 0.991869918699187 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
12696339 12696339 PRJNA796753_P_NODE_33170_length_269_cov_5.107143_g32858_i0 PRJNA796753 33170 269 5.107143 13.73821467 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 292 1.33e-74   NTclustered gi|66932472|gb|AY818731.1| 159866 g32858 i0 86.245 96.8327137546468 269 37 100 0 1 269 1172 904 Rhabdammina cornuta clone A4 alpha tubulin gene, partial cds blastn 26048 292 1 Eukaryota Sar   Foraminifera   Astrorhizida Astrorhizidae Rhabdammina Rhabdammina cornuta
13534435 13534435 PRJNA796753_P_NODE_43091_length_248_cov_1.760000_g42779_i0 PRJNA796753 43091 248 1.76 4.3648 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 136 1.26e-39   NR ETO31022.1 46433 g42779 i0 79.3 3.96774193548387 82 17 99.2 0 247 2 22 103 ETO31022.1 heat shock protein 60 [Reticulomyxa filosa] diamond 984 136 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
28633150 28633150 PRJNA796753_P_NODE_52987_length_242_cov_0.911243_g52675_i0 PRJNA796753 52987 242 0.911243 2.20520806 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 89.4 1.47e-18   NR ETO22614.1 46433 g52675 i0 51.3 1.95867768595041 80 38 97.9 1 5 241 1309 1388 ETO22614.1 hypothetical protein RFI_14580 [Reticulomyxa filosa] diamond 474 89.4 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
31823726 31823726 PRJNA796753_P_NODE_15517_length_363_cov_1.565517_g15205_i0 PRJNA796753 15517 363 1.565517 5.68282671 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 99.8 9.59e-22   NR ETO09319.1 46433 g15205 i0 43.1 2.01652892561983 123 65 98.3 3 361 5 301 422 ETO09319.1 hypothetical protein RFI_28070 [Reticulomyxa filosa] diamond 732 99.8 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;