RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA796753", tax_clade = "Methanomada group" and tax_phylum = "Methanobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 7 ✖

tax_kingdom 1

tax_clade 1

  • Methanomada group · 7 ✖

bioproject 1

  • PRJNA796753 · 7 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27053960 27053960 PRJNA796753_P_NODE_40682_length_250_cov_0.870056_g40370_i0 PRJNA796753 40682 250 0.870056 2.17514 uncultured Methanobrevibacter sp. 253161 Archaea Archaea 42.4 0.0256   NR WP_296848038.1 253161 g40370 i0 33.8 0.888 74 48 87.6 1 26 244 61 134 WP_296848038.1 hypothetical protein [uncultured Methanobrevibacter sp.] diamond 222 42.4 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter uncultured Methanobrevibacter sp.
28790654 28790654 PRJNA796753_P_NODE_5487_length_576_cov_1.401590_g5179_i0 PRJNA796753 5487 576 1.40159 8.0731584 uncultured Methanobrevibacter sp. 253161 Archaea Archaea 46.6 0.0376   NR WP_298501364.1 253161 g5179 i0 25.2 0.744791666666667 143 96 71.9 4 416 3 18 154 WP_298501364.1 right-handed parallel beta-helix repeat-containing protein, partial [uncultured Methanobrevibacter sp.] diamond 429 46.6 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter uncultured Methanobrevibacter sp.
29147584 29147584 PRJNA796753_P_NODE_36369_length_259_cov_1.241935_g36057_i0 PRJNA796753 36369 259 1.241935 3.21661165 root 1 Root_unresolved Root_unresolved 101 4.48e-24   NR WP_071907853.1 118062 g36057 i0 56.4 5.45559845559846 78 34 90.3 0 22 255 65 142 WP_071907853.1 DODA-type extradiol aromatic ring-opening family dioxygenase [Methanobacterium congolense] diamond 1413 101 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium congolense
29968260 29968260 PRJNA796753_P_NODE_51471_length_243_cov_0.905882_g51159_i0 PRJNA796753 51471 243 0.905882 2.20129326 root 1 Root_unresolved Root_unresolved 47 0.00122   NR WP_058739066.1 230361 g51159 i0 40.4 1.53086419753086 57 33 69.1 1 32 199 163 219 WP_058739066.1 Ig-like domain repeat protein [Methanobrevibacter millerae] diamond 372 47.4 0.991561181434599 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter millerae
31412712 31412712 PRJNA796753_P_NODE_37976_length_253_cov_1.711111_g37664_i0 PRJNA796753 37976 253 1.711111 4.32911083 Methanosphaera sp. 2666342 Archaea Archaea 56.6 5.5e-7   NR MEE3325473.1 2666342 g37664 i0 43.7 2.21739130434783 87 38 93.7 7 250 14 198 281 MEE3325473.1 hypothetical protein [Methanosphaera sp.] diamond 561 56.6 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera sp.
32307916 32307916 PRJNA796753_P_NODE_36779_length_257_cov_1.983696_g36467_i0 PRJNA796753 36779 257 1.983696 5.09809872 Methanobacteriaceae 2159 Archaea Archaea 65.9 3.27e-10   NR WP_292800363.1 66852 g36467 i0 38.8 2.47470817120623 67 40 77 1 15 212 965 1031 WP_292800363.1 hypothetical protein [Methanobrevibacter sp.] diamond 636 66.2 0.995468277945619 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
32645833 32645833 PRJNA796753_P_NODE_51400_length_243_cov_0.905882_g51088_i0 PRJNA796753 51400 243 0.905882 2.20129326 Methanobrevibacter oralis 66851 Archaea Archaea 42.7 0.0344   NR WP_042694748.1 66851 g51088 i0 62.2 0.45679012345679 37 14 45.7 0 5 115 67 103 WP_042694748.1 SAP domain-containing protein [Methanobrevibacter oralis] diamond 111 42.7 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter oralis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;