RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where bioproject = "PRJNA796753", tax_clade = "Metamonada" and tax_phylum = "Parabasalia"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 7 ✖

tax_clade 1

  • Metamonada · 7 ✖

bioproject 1

  • PRJNA796753 · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17359012 17359012 PRJNA796753_P_NODE_22314_length_315_cov_1.590909_g22002_i0 PRJNA796753 22314 315 1.590909 5.01136335 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 52.8 0.029   NTclustered gi|123436956|ref|XM_001309279.1| 412133 g22002 i0 100 0.0888888888888889 28 0 9 0 59 86 676 703 Trichomonas vaginalis G3 Cilia- and flagella-associated protein 20/CFAP20DC family (TVAGG3_0545320), partial mRNA blastn 28 52.8 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
21183127 21183127 PRJNA796753_P_NODE_25297_length_299_cov_0.783186_g24985_i0 PRJNA796753 25297 299 0.783186 2.34172614 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 52.8 0.028   NTclustered gi|2806455214|ref|XM_068502236.1| 1144522 g24985 i0 100 0.0936454849498328 28 0 9 0 30 57 415 388 Tritrichomonas foetus leucine-rich repeat-containing protein 23-like protein (TRFO_21865), partial mRNA blastn 28 52.8 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
22457960 22457960 PRJNA796753_P_NODE_49958_length_244_cov_0.900585_g49646_i0 PRJNA796753 49958 244 0.900585 2.1974274 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 54.7 0.006   NTclustered gi|2794865072|ref|XM_067915707.1| 135588 g49646 i0 100 0.118852459016393 29 0 12 0 79 107 245 217 Histomonas meleagridis uncharacterized protein (GO595_002762), partial mRNA blastn 29 54.7 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
27338442 27338442 PRJNA796753_P_NODE_32743_length_271_cov_1.449495_g32431_i0 PRJNA796753 32743 271 1.449495 3.92813145 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 53.5 3.91e-6   NR XP_001318893.1 412133 g32431 i0 57.1 3 49 21 54.2 0 240 94 2 50 XP_001318893.1 small Rab GTPase RabD2 [Trichomonas vaginalis G3] diamond 813 53.5 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
27559217 27559217 PRJNA796753_P_NODE_44504_length_248_cov_0.880000_g44192_i0 PRJNA796753 44504 248 0.88 2.1824 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 68.6 2.41e-11   NR XP_067777913.1 135588 g44192 i0 39.8 2.43145161290323 93 35 87.1 1 217 2 107 199 XP_067777913.1 CMGC family protein kinase [Histomonas meleagridis] diamond 603 68.6 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
27654317 27654317 PRJNA796753_P_NODE_51284_length_243_cov_0.905882_g50972_i0 PRJNA796753 51284 243 0.905882 2.20129326 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 60.1 2.88e-8   NR XP_068367893.1 1144522 g50972 i0 34.6 0.962962962962963 78 51 96.3 0 241 8 425 502 XP_068367893.1 uncharacterized protein TRFO_03032 [Tritrichomonas foetus] diamond 234 60.1 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
30433395 30433395 PRJNA796753_P_NODE_50313_length_244_cov_0.900585_g50001_i0 PRJNA796753 50313 244 0.900585 2.1974274 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 47 0.00121   NR XP_001325845.1 412133 g50001 i0 38.4 1.05737704918033 86 47 98.4 2 5 244 303 388 XP_001325845.1 M28 Nicastrin domain-containing protein [Trichomonas vaginalis G3] diamond 258 47 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;