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contig_metadata

23 rows where bioproject = "PRJNA796753", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 23 ✖

tax_clade 1

  • Amoebozoa · 23 ✖

bioproject 1

  • PRJNA796753 · 23 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2056744 2056744 PRJNA796753_P_NODE_582_length_1445_cov_27.463557_g480_i0 PRJNA796753 582 1445 27.463557 396.84839865 Copromyxa protea 931554 Tubulinea other_Eukaryota 1546 0   NTclustered gi|508737347|dbj|AB766053.1| 931554 g480 i0 86.876 68.9640138408304 1402 158 96 14 43 1422 1398 1 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 99653 1546 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
3331799 3331799 PRJNA796753_P_NODE_35463_length_262_cov_1.222222_g35151_i0 PRJNA796753 35463 262 1.222222 3.20222164 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 126 8.14e-33   NR AAY34140.1 5778 g35151 i0 72.3 0.950381679389313 83 23 95 0 14 262 105 187 AAY34140.1 Nop58p, partial [Vermamoeba vermiformis] diamond 249 126 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
4609024 4609024 PRJNA796753_P_NODE_26004_length_295_cov_0.873874_g25692_i0 PRJNA796753 26004 295 0.873874 2.5779283 Copromyxa protea 931554 Tubulinea other_Eukaryota 239 1.9600000000000003e-58   NTclustered gi|508737347|dbj|AB766053.1| 931554 g25692 i0 82.374 0.942372881355932 278 45 94 4 20 295 1386 1111 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 278 239 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
7158971 7158971 PRJNA796753_P_NODE_1166_length_1122_cov_3.301239_g989_i0 PRJNA796753 1166 1122 3.301239 37.03990158 Amoeba proteus 5775 Tubulinea other_Eukaryota 393 1.1099999999999998e-131   NR AAD37351.1 5775 g989 i0 60.8 0.941176470588235 352 131 93.3 4 3 1049 19 366 AAD37351.1 pepstatin-insensitive carboxyl proteinase 1, partial [Amoeba proteus] diamond 1056 393 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
8433909 8433909 PRJNA796753_P_NODE_47487_length_245_cov_2.087209_g47175_i0 PRJNA796753 47487 245 2.087209 5.11366205 Glaeseria mira 242547 Tubulinea other_Eukaryota 303 5.53e-78   NTclustered gi|33946352|gb|AY294155.1| 242547 g47175 i0 89.024 93.6040816326531 246 26 100 1 1 245 270 25 Glaeseria mira actin mRNA, partial cds blastn 22933 303 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Glaeseria Glaeseria mira
11420567 11420567 PRJNA796753_P_NODE_32709_length_271_cov_1.555556_g32397_i0 PRJNA796753 32709 271 1.555556 4.21555676 Amoeba proteus 5775 Tubulinea other_Eukaryota 160 1.34e-45   NR AAP88974.1 5775 g32397 i0 84.3 0.985239852398524 89 14 98.5 0 5 271 5 93 AAP88974.1 S-adenosylmethionine synthetase 2 [Amoeba proteus] diamond 267 160 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
13534559 13534559 PRJNA796753_P_NODE_931_length_1218_cov_5.951965_g775_i0 PRJNA796753 931 1218 5.951965 72.4949337 Amoeba proteus 5775 Tubulinea other_Eukaryota 680 7.520000000000001e-245   NR AAP88974.1 5775 g775 i0 84.3 0.955665024630542 388 61 95.6 0 1217 54 2 389 AAP88974.1 S-adenosylmethionine synthetase 2 [Amoeba proteus] diamond 1164 680 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
16083121 16083121 PRJNA796753_P_NODE_13053_length_389_cov_2.506329_g12741_i0 PRJNA796753 13053 389 2.506329 9.74961981 Saccamoeba limax 136464 Tubulinea other_Eukaryota 713 0   NTclustered gi|213950421|gb|EU869301.1| 136464 g12741 i0 99.743 23.4858611825193 389 1 100 0 1 389 1498 1886 Saccamoeba limax strain NTSHR small subunit ribosomal RNA gene, partial sequence blastn 9136 713 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba limax
16083151 16083151 PRJNA796753_P_NODE_18813_length_337_cov_1.575758_g18501_i0 PRJNA796753 18813 337 1.575758 5.31030446 Hartmannella cantabrigiensis 239731 Tubulinea other_Eukaryota 425 1.63e-114   NTclustered gi|33946358|gb|AY294158.1| 239731 g18501 i0 93.95 77.7181008902077 281 17 83 0 57 337 1151 871 Hartmannella cantabrigiensis actin mRNA, complete cds blastn 26191 425 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Hartmannella Hartmannella cantabrigiensis
16083393 16083393 PRJNA796753_P_NODE_9233_length_454_cov_1.711286_g8921_i0 PRJNA796753 9233 454 1.711286 7.76923844 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 616 1.2399999999999999e-171   NTclustered gi|62910949|gb|AY925001.1| 5778 g8921 i0 94.911 1.06828193832599 393 20 87 0 62 454 1 393 Hartmannella vermiformis Rpl7A mRNA, partial cds blastn 485 616 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
17358936 17358936 PRJNA796753_P_NODE_10214_length_433_cov_2.288889_g9902_i0 PRJNA796753 10214 433 2.288889 9.91088937 Copromyxa protea 931554 Tubulinea other_Eukaryota 226 1.69e-69   NR BAN33737.1 931554 g9902 i0 84.6 0.900692840646651 130 20 90.1 0 433 44 335 464 BAN33737.1 elongation factor-like protein [Copromyxa protea] diamond 390 226 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
19907421 19907421 PRJNA796753_P_NODE_17096_length_349_cov_1.952899_g16784_i0 PRJNA796753 17096 349 1.952899 6.81561751 Copromyxa protea 931554 Tubulinea other_Eukaryota 398 3.6699999999999982e-106   NTclustered gi|508737347|dbj|AB766053.1| 931554 g16784 i0 88.889 33.7994269340974 324 34 93 2 6 328 221 543 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 11796 398 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
22457737 22457737 PRJNA796753_P_NODE_13218_length_387_cov_1.961783_g12906_i0 PRJNA796753 13218 387 1.961783 7.59210021 Saccamoeba limax 136464 Tubulinea other_Eukaryota 684 0   NTclustered gi|213950421|gb|EU869301.1| 136464 g12906 i0 98.462 72.2093023255814 390 3 100 1 1 387 1280 891 Saccamoeba limax strain NTSHR small subunit ribosomal RNA gene, partial sequence blastn 27945 684 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba limax
25007039 25007039 PRJNA796753_P_NODE_17940_length_343_cov_1.140741_g17628_i0 PRJNA796753 17940 343 1.140741 3.91274163 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 501 2.6799999999999993e-137   NTclustered gi|423292048|gb|JQ519470.1| 5778 g17628 i0 96.98 93.2827988338192 298 9 87 0 44 341 908 611 Vermamoeba vermiformis clone JG10.132_b5 alpha tubulin gene, partial cds blastn 31996 501 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
27243490 27243490 PRJNA796753_P_NODE_43343_length_248_cov_0.880000_g43031_i0 PRJNA796753 43343 248 0.88 2.1824 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 113 3.26e-29   NR ABD46563.1 5778 g43031 i0 63.4 0.991935483870968 82 28 99.2 1 248 3 39 118 ABD46563.1 succinyl-diaminopimelate desuccinylase-like protein A, partial [Vermamoeba vermiformis] diamond 246 113 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
27749127 27749127 PRJNA796753_P_NODE_52304_length_242_cov_0.911243_g51992_i0 PRJNA796753 52304 242 0.911243 2.20520806 Nolandella sp. LAK-2 1908693 Tubulinea other_Eukaryota 98.6 4.91e-23   NR AFX73095.1 1260117 g51992 i0 56.3 3.91735537190083 80 35 99.2 0 3 242 84 163 AFX73095.1 elongation factor 2 alpha, partial [Nolandella sp. LAK-2012] diamond 948 98.6 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Nolandella Nolandella sp. LAK-2012
28506636 28506636 PRJNA796753_P_NODE_34867_length_264_cov_1.209424_g34555_i0 PRJNA796753 34867 264 1.209424 3.19287936 Amoeba proteus 5775 Tubulinea other_Eukaryota 83.6 2.05e-16   NR AAD37352.1 5775 g34555 i0 48 1.77272727272727 75 38 85.2 1 240 16 344 417 AAD37352.1 pepstatin-insensitive carboxyl proteinase 2, partial [Amoeba proteus] diamond 468 83.6 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
28790639 28790639 PRJNA796753_P_NODE_38607_length_251_cov_1.646067_g38295_i0 PRJNA796753 38607 251 1.646067 4.13162817 Amoeba proteus 5775 Tubulinea other_Eukaryota 43.9 0.0163   NR AKN09691.1 5775 g38295 i0 43.9 0.49003984063745 41 22 47.8 1 132 251 178 218 AKN09691.1 Tom70 [Amoeba proteus] diamond 123 43.9 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
30622439 30622439 PRJNA796753_P_NODE_4113_length_660_cov_2.064736_g3813_i0 PRJNA796753 4113 660 2.064736 13.6272576 Amoeba proteus 5775 Tubulinea other_Eukaryota 266 1.4299999999999995e-87   NR AAW58116.1 5775 g3813 i0 83.6 0.690909090909091 152 25 69.1 0 185 640 22 173 AAW58116.1 peroxiredoxin, partial [Amoeba proteus] diamond 456 266 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
30685622 30685622 PRJNA796753_P_NODE_26073_length_294_cov_1.475113_g25761_i0 PRJNA796753 26073 294 1.475113 4.33683222 Copromyxa protea 931554 Tubulinea other_Eukaryota 137 3.52e-36   NR BAN33737.1 931554 g25761 i0 67 1.02040816326531 100 30 99 1 3 293 176 275 BAN33737.1 elongation factor-like protein [Copromyxa protea] diamond 300 137 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
32330451 32330451 PRJNA796753_P_NODE_26159_length_294_cov_1.045249_g25847_i0 PRJNA796753 26159 294 1.045249 3.07303206 Amoeba proteus 5775 Tubulinea other_Eukaryota 147 1.67e-38   NR AAD33718.1 5775 g25847 i0 71 1.02040816326531 100 26 99 1 293 3 45 144 AAD33718.1 myosin heavy chain [Amoeba proteus] diamond 300 147 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
32466012 32466012 PRJNA796753_P_NODE_24159_length_305_cov_1.314655_g23847_i0 PRJNA796753 24159 305 1.314655 4.00969775 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 135 3.05e-35   NR BAN33737.1 931554 g23847 i0 74.7 4.34754098360656 87 22 85.6 0 44 304 4 90 BAN33737.1 elongation factor-like protein [Copromyxa protea] diamond 1326 136 0.992647058823529 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
32844055 32844055 PRJNA796753_P_NODE_43180_length_248_cov_1.617143_g42868_i0 PRJNA796753 43180 248 1.617143 4.01051464 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 133 4.409999999999999e-37   NR AFX73089.1 497998 g42868 i0 74.4 4.81451612903226 78 20 94.4 0 1 234 29 106 AFX73089.1 elongation factor 2 alpha, partial [Arcella hemisphaerica] diamond 1194 134 0.992537313432836 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Arcellidae Arcella Arcella hemisphaerica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;