RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA796639", tax_phylum = "Myxococcota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

  • Myxococcota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA796639 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27527748 27527748 PRJNA796639_P_NODE_6443_length_247_cov_0.885057_g6318_i0 PRJNA796639 6443 247 0.885057 2.18609079 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 42.7 0.0375   NR RME19351.1 2026735 g6318 i0 48 0.607287449392713 50 23 57.1 1 36 176 204 253 RME19351.1 MAG: hypothetical protein D6806_18445, partial [Deltaproteobacteria bacterium] diamond 150 42.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
31222672 31222672 PRJNA796639_P_NODE_3875_length_289_cov_1.083333_g3750_i0 PRJNA796639 3875 289 1.083333 3.13083237 Myxococcales bacterium 2026763 Bacteria Bacteria 43.1 0.0492   NR MCB9548317.1 2026763 g3750 i0 36.7 0.934256055363322 90 52 89.3 3 289 32 600 688 MCB9548317.1 hypothetical protein [Myxococcales bacterium] diamond 270 43.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;