RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA796639", tax_phylum = "Chloroflexota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

  • Chloroflexota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA796639 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31823718 31823718 PRJNA796639_P_NODE_4297_length_280_cov_1.246377_g4172_i0 PRJNA796639 4297 280 1.246377 3.4898556 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 43.9 0.0197   NR MFQ5933018.1 2026734 g4172 i0 34.7 0.771428571428571 72 40 77.1 2 249 34 69 133 MFQ5933018.1 phosphatase PAP2 family protein [Dehalococcoidia bacterium] diamond 216 43.9 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
32456841 32456841 PRJNA796639_P_NODE_6459_length_247_cov_0.885057_g6334_i0 PRJNA796639 6459 247 0.885057 2.18609079 Caldilinea sp. 2293560 Bacteria Bacteria 43.5 0.0177   NR MFO7631691.1 2293560 g6334 i0 42.4 0.801619433198381 66 34 80.2 2 227 30 5 66 MFO7631691.1 A24 family peptidase [Caldilinea sp.] diamond 198 43.5 1 Bacteria   Bacillati Chloroflexota Caldilineae Caldilineales Caldilineaceae Caldilinea Caldilinea sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;