RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA795983" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA795983 · 7 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27211675 27211675 PRJNA795983_S_NODE_25862_length_282_cov_1.157895_g25737_i0 PRJNA795983 25862 282 1.157895 3.2652639 Akkermansia sp. 1872421 Bacteria Bacteria 49.7 2.11e-4   NR MCC8022045.1 1872421 g25737 i0 34.7 2.93617021276596 95 57 98.9 2 280 2 376 467 MCC8022045.1 beta-galactosidase [Akkermansia sp.] diamond 828 49.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia sp.
27591147 27591147 PRJNA795983_S_NODE_39264_length_246_cov_0.890173_g39139_i0 PRJNA795983 39264 246 0.890173 2.18982558 Luteolibacter marinus 2776705 Bacteria Bacteria 48.5 3.6e-4   NR WP_193214476.1 2776705 g39139 i0 46.7 0.731707317073171 60 32 73.2 0 182 3 169 228 WP_193214476.1 LamG-like jellyroll fold domain-containing protein [Luteolibacter marinus] diamond 180 48.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter marinus
28443617 28443617 PRJNA795983_S_NODE_21366_length_301_cov_1.013158_g21241_i0 PRJNA795983 21366 301 1.013158 3.04960558 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 86.3 7.84e-18   NR HZO84802.1 2499141 g21241 i0 48 4.82392026578073 98 46 97.7 2 6 299 38 130 HZO84802.1 DUF4394 domain-containing protein [Verrucomicrobiia bacterium] diamond 1452 86.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
28601383 28601383 PRJNA795983_S_NODE_23987_length_289_cov_1.425926_g23862_i0 PRJNA795983 23987 289 1.425926 4.12092614 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 41.6 0.0414   NR NUN93502.1 2499141 g23862 i0 35.6 0.612456747404844 59 37 61.2 1 279 103 17 74 NUN93502.1 winged helix-turn-helix transcriptional regulator [Verrucomicrobiia bacterium] diamond 177 41.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
28926104 28926104 PRJNA795983_S_NODE_32888_length_259_cov_1.241935_g32763_i0 PRJNA795983 32888 259 1.241935 3.21661165 Bacteria 2 Bacteria Bacteria 113 2.88e-27   NR PAW88045.1 1982318 g32763 i0 64 11.988416988417 86 31 99.6 0 259 2 37 122 PAW88045.1 MAG: UDP-glucose 6-dehydrogenase [Opitutia bacterium Tous-C10FEB] diamond 3105 114 0.991228070175439 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia       Opitutia bacterium Tous-C10FEB
28980379 28980379 PRJNA795983_S_NODE_32148_length_261_cov_1.478723_g32023_i0 PRJNA795983 32148 261 1.478723 3.85946703 Pelagicoccus mobilis 415221 Bacteria Bacteria 56.6 5.95e-7   NR WP_200355244.1 415221 g32023 i0 45.7 1.83908045977011 46 25 52.9 0 114 251 103 148 WP_200355244.1 kelch repeat-containing protein [Pelagicoccus mobilis] diamond 480 56.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Puniceicoccales Pelagicoccaceae Pelagicoccus Pelagicoccus mobilis
32172099 32172099 PRJNA795983_S_NODE_938_length_967_cov_32.155481_g865_i0 PRJNA795983 938 967 32.155481 310.94350127 Verrucomicrobiales bacterium 2026801 Bacteria Bacteria 62.8 2.52e-7   NR MBE7498962.1 2026801 g865 i0 33.7 0.617373319544985 199 109 57.4 10 722 168 26 215 MBE7498962.1 hypothetical protein [Verrucomicrobiales bacterium] diamond 597 62.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;