RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA795983", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA795983 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19068202 19068202 PRJNA795983_S_NODE_38935_length_246_cov_1.676301_g38810_i0 PRJNA795983 38935 246 1.676301 4.12370046 Mollicutes 31969 Bacteria Bacteria 455 1.4500000000000002e-123   NTclustered gi|1958638505|gb|MW498314.1| 2100 g38810 i0 100 97.3414634146341 246 0 100 0 1 246 981 1226 Mesomycoplasma hyorhinis strain MycSu128 23S ribosomal RNA gene, partial sequence blastn 23946 455 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis
21182699 21182699 PRJNA795983_S_NODE_42037_length_242_cov_1.230769_g41912_i0 PRJNA795983 42037 242 1.230769 2.97846098 Ureaplasma sp. 1965234 Bacteria Bacteria 128 3.28e-33   NR MDE6289453.1 1965234 g41912 i0 73.8 4.93388429752066 80 21 99.2 0 241 2 303 382 MDE6289453.1 asparagine--tRNA ligase [Ureaplasma sp.] diamond 1194 128 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Mycoplasmoidaceae Ureaplasma Ureaplasma sp.
32897833 32897833 PRJNA795983_S_NODE_35300_length_252_cov_1.631285_g35175_i0 PRJNA795983 35300 252 1.631285 4.1108382 Haloplasmataceae bacterium 2862752 Bacteria Bacteria 48.9 2.93e-4   NR MDF2698612.1 2862752 g35175 i0 38.9 1.96428571428571 90 44 100 3 1 252 1034 1118 MDF2698612.1 type sorting protein [Haloplasmataceae bacterium] diamond 495 48.9 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Haloplasmatales Haloplasmataceae   Haloplasmataceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;