RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA795983", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 7 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 7 ✖

bioproject 1

  • PRJNA795983 · 7 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8433340 8433340 PRJNA795983_S_NODE_41147_length_243_cov_1.605882_g41022_i0 PRJNA795983 41147 243 1.605882 3.90229326 Chlamydiales bacterium 2047757 Bacteria Bacteria 117 9.5e-29   NR MDR3624728.1 2047757 g41022 i0 69.9 5.38271604938272 73 22 90.1 0 221 3 189 261 MDR3624728.1 asparagine--tRNA ligase [Chlamydiales bacterium] diamond 1308 117 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
22457137 22457137 PRJNA795983_S_NODE_1158_length_896_cov_3.742406_g1076_i0 PRJNA795983 1158 896 3.742406 33.53195776 Simkania sp. 34094 Bacteria Bacteria 283 6.61e-92   NR MCB1084310.1 34094 g1076 i0 71.7 0.639508928571429 191 54 64 0 622 50 1 191 MCB1084310.1 hypothetical protein [Simkania sp.] diamond 573 283 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae Simkania Simkania sp.
22894147 22894147 PRJNA795983_S_NODE_8318_length_415_cov_2.552632_g8193_i0 PRJNA795983 8318 415 2.552632 10.5934228 Simkania sp. 34094 Bacteria Bacteria 95.1 7.270000000000001e-21   NR MCB1084310.1 34094 g8193 i0 63.2 0.491566265060241 68 25 49.2 0 2 205 105 172 MCB1084310.1 hypothetical protein [Simkania sp.] diamond 204 95.1 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae Simkania Simkania sp.
26736867 26736867 PRJNA795983_S_NODE_24041_length_289_cov_1.277778_g23916_i0 PRJNA795983 24041 289 1.277778 3.69277842 Simkania sp. 34094 Bacteria Bacteria 94.4 3.13e-21   NR MCB1084310.1 34094 g23916 i0 64.6 0.674740484429066 65 23 67.5 0 195 1 1 65 MCB1084310.1 hypothetical protein [Simkania sp.] diamond 195 94.4 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae Simkania Simkania sp.
27085494 27085494 PRJNA795983_S_NODE_18542_length_315_cov_1.504132_g18417_i0 PRJNA795983 18542 315 1.504132 4.7380158 Chlamydiales bacterium 2047757 Bacteria Bacteria 165 5.08e-50   NR MCP5470420.1 2047757 g18417 i0 83.7 0.933333333333333 98 16 93.3 0 315 22 11 108 MCP5470420.1 ribosomal protein L24e family protein [Chlamydiales bacterium] diamond 294 165 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
28127803 28127803 PRJNA795983_S_NODE_38825_length_246_cov_2.283237_g38700_i0 PRJNA795983 38825 246 2.283237 5.61676302 Chlamydiales bacterium 2047757 Bacteria Bacteria 105 1.4e-26   NR MCP5470420.1 2047757 g38700 i0 59.3 0.98780487804878 81 33 98.8 0 243 1 10 90 MCP5470420.1 ribosomal protein L24e family protein [Chlamydiales bacterium] diamond 243 105 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
32456837 32456837 PRJNA795983_S_NODE_5359_length_488_cov_2.086747_g5234_i0 PRJNA795983 5359 488 2.086747 10.18332536 Chlamydiales bacterium 2047757 Bacteria Bacteria 139 1.37e-38   NR MCP5470420.1 2047757 g5234 i0 81 0.485655737704918 79 15 48.6 0 487 251 1 79 MCP5470420.1 ribosomal protein L24e family protein [Chlamydiales bacterium] diamond 237 139 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;