RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA795663" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA795663 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2491837 2491837 PRJNA795663_S_NODE_6762_length_228_cov_2.026178_g6657_i0 PRJNA795663 6762 228 2.026178 4.61968584 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 103 9.21e-26   NR XP_003376876.1 6334 g6657 i0 71 42.2105263157895 69 20 90.8 0 21 227 41 109 XP_003376876.1 60S ribosomal protein L31 [Trichinella spiralis] diamond 9624 103 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
29106571 29106571 PRJNA795663_S_NODE_7568_length_217_cov_2.894444_g7463_i0 PRJNA795663 7568 217 2.894444 6.28094348 Trichinella nativa 6335 Nematoda Nematoda 62.8 2.5e-11   NR KRZ47273.1 6335 g7463 i0 91.7 0.497695852534562 36 3 49.8 0 183 76 8 43 KRZ47273.1 hypothetical protein T02_1459 [Trichinella nativa] diamond 108 62.8 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella nativa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;