RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where bioproject = "PRJNA795663", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 7 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 7 ✖

bioproject 1

  • PRJNA795663 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3330622 3330622 PRJNA795663_S_NODE_6163_length_237_cov_2.540000_g6058_i0 PRJNA795663 6163 237 2.54 6.0198 Prosthecobacter dejongeii 48465 Bacteria Bacteria 305 1.48e-78   NTclustered gi|183579826|emb|AM905423.1| 48465 g6058 i0 94.472 230.324894514768 199 9 84 2 39 237 1484 1680 Prosthecobacter dejongeii partial 23S rRNA gene, strain DSM12251 blastn 54587 305 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter dejongeii
5044555 5044555 PRJNA795663_S_NODE_344_length_821_cov_5.272959_g278_i0 PRJNA795663 344 821 5.272959 43.29099339 Verrucomicrobiota 74201 Bacteria Bacteria 928 0   NTclustered gi|2874253768|emb|OY969715.1| 412056 g278 i0 87.093 200.237515225335 829 95 100 11 1 821 915447 914623 MAG: uncultured Verrucomicrobiae bacterium isolate MFD01916.bin.1.1 genome assembly, chromosome: 1 blastn 164395 928 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
5882825 5882825 PRJNA795663_S_NODE_12405_length_177_cov_1.828571_g12300_i0 PRJNA795663 12405 177 1.828571 3.23657067 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 292 8.09e-75   NTclustered gi|2874254065|emb|OY970130.1| 412056 g12300 i0 96.61 18.0790960451977 177 4 100 2 1 177 5153596 5153422 MAG: uncultured Verrucomicrobiae bacterium isolate MFD05705.bin.c.1 genome assembly, chromosome: 1 blastn 3200 292 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
9707560 9707560 PRJNA795663_S_NODE_14668_length_165_cov_2.101562_g14563_i0 PRJNA795663 14668 165 2.101562 3.4675773 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 217 4.619999999999999e-52   NTclustered gi|2874253952|emb|OY970277.1| 412056 g14563 i0 90.303 202.2 165 16 100 0 1 165 2751010 2750846 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04580.bin.1.45 genome assembly, chromosome: 1 blastn 33363 217 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
14808015 14808015 PRJNA795663_S_NODE_3372_length_313_cov_1.163043_g3267_i0 PRJNA795663 3372 313 1.163043 3.64032459 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 435 2.49e-117   NTclustered gi|2874254065|emb|OY970130.1| 412056 g3267 i0 91.693 22.9968051118211 313 26 100 0 1 313 5153948 5153636 MAG: uncultured Verrucomicrobiae bacterium isolate MFD05705.bin.c.1 genome assembly, chromosome: 1 blastn 7198 435 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
18630945 18630945 PRJNA795663_S_NODE_2255_length_377_cov_2.141176_g2150_i0 PRJNA795663 2255 377 2.141176 8.07223352 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 401 3.089999999999999e-107   NTclustered gi|2874253690|emb|OY969416.1| 412056 g2150 i0 89.623 16.6472148541114 318 30 84 3 39 353 1316471 1316154 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.1.157 genome assembly, chromosome: 1 blastn 6276 401 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
32203536 32203536 PRJNA795663_S_NODE_13118_length_173_cov_1.705882_g13013_i0 PRJNA795663 13118 173 1.705882 2.95117586 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 63.9 4.81e-10   NR HUJ09072.1 2499141 g13013 i0 62.5 2.13294797687861 48 15 79.8 2 32 169 3 49 HUJ09072.1 hypothetical protein [Verrucomicrobiia bacterium] diamond 369 63.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;