RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA795663", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 7 ✖

tax_clade 1

  • Amoebozoa · 7 ✖

bioproject 1

  • PRJNA795663 · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14808127 14808127 PRJNA795663_S_NODE_8752_length_204_cov_1.604790_g8647_i0 PRJNA795663 8752 204 1.60479 3.2737716 Thecamoeba similis 242545 Discosea other_Eukaryota 178 2.81e-40   NTclustered gi|33946350|gb|AY294154.1| 242545 g8647 i0 83.957 18.3921568627451 187 28 91 2 8 193 657 842 Thecamoeba similis actin mRNA, complete cds blastn 3752 178 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Thecamoeba Thecamoeba similis
21181930 21181930 PRJNA795663_S_NODE_3617_length_303_cov_4.383459_g3512_i0 PRJNA795663 3617 303 4.383459 13.28188077 uncultured Vannellidae 544561 Discosea other_Eukaryota 246 1.21e-60   NTclustered gi|724028230|gb|KP099889.1| 544561 g3512 i0 81.699 43.1551155115512 306 47 100 8 1 303 539 838 Uncultured Vannellidae clone b18 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 13076 246 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae   uncultured Vannellidae
25005808 25005808 PRJNA795663_S_NODE_1860_length_410_cov_12.163539_g1755_i0 PRJNA795663 1860 410 12.163539 49.8705099 uncultured Vannellidae 544561 Discosea other_Eukaryota 161 6.27e-35   NTclustered gi|724028223|gb|KP099882.1| 544561 g1755 i0 97.849 19.780487804878 93 2 23 0 1 93 831 923 Uncultured Vannellidae clone b25 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 8110 161 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae   uncultured Vannellidae
26873410 26873410 PRJNA795663_S_NODE_15901_length_160_cov_2.186992_g15796_i0 PRJNA795663 15901 160 2.186992 3.4991872 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 87.8 2.21e-20   NR XP_004333194.1 1257118 g15796 i0 73.6 1.9875 53 14 99.4 0 159 1 34 86 XP_004333194.1 guanine nucleotidebinding protein alpha-1 subunit [Acanthamoeba castellanii str. Neff] diamond 318 88.2 0.99546485260771 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28253916 28253916 PRJNA795663_S_NODE_9706_length_195_cov_2.183544_g9601_i0 PRJNA795663 9706 195 2.183544 4.2579108 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 82.4 3.48e-18   NR XP_004337874.1 1257118 g9601 i0 69.1 0.846153846153846 55 16 84.6 1 167 3 23 76 XP_004337874.1 uncharacterized protein ACA1_187480 [Acanthamoeba castellanii str. Neff] diamond 165 82.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29359128 29359128 PRJNA795663_S_NODE_8449_length_207_cov_2.029412_g8344_i0 PRJNA795663 8449 207 2.029412 4.20088284 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 70.1 5.14e-12   NR XP_004337380.1 1257118 g8344 i0 48.5 1.91304347826087 66 33 94.2 1 1 195 309 374 XP_004337380.1 GTPaseactivating protein [Acanthamoeba castellanii str. Neff] diamond 396 70.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29927626 29927626 PRJNA795663_S_NODE_3011_length_329_cov_2.503425_g2906_i0 PRJNA795663 3011 329 2.503425 8.23626825 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 161 5.46e-44   NR XP_004368005.1 1257118 g2906 i0 66.1 1.98784194528875 109 37 99.4 0 328 2 416 524 XP_004368005.1 GTPase activating Rap/RanGAP domainlike 3, putative [Acanthamoeba castellanii str. Neff] diamond 654 161 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;