RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA793147" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA793147 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26904853 26904853 PRJNA793147_P_NODE_39141_length_269_cov_1.315000_g38875_i0 PRJNA793147 39141 269 1.315 3.53735 root 1 Root_unresolved Root_unresolved 52.8 1.38e-5   NR MFA7345307.1 2832348 g38875 i0 44.3 1.46096654275093 70 38 78.1 1 57 266 20 88 MFA7345307.1 2-enoyl thioester reductase domain-containing protein [Terrimicrobiaceae bacterium] diamond 393 52.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Terrimicrobiia Terrimicrobiales Terrimicrobiaceae   Terrimicrobiaceae bacterium
27252529 27252529 PRJNA793147_P_NODE_46103_length_248_cov_1.296089_g45837_i0 PRJNA793147 46103 248 1.296089 3.2143007199999998 Pseudomonadati 3379134 Bacteria Bacteria 81.3 1.12e-15   NR MEI7912694.1 2026799 g45837 i0 52.4 4.95967741935484 82 39 99.2 0 248 3 118 199 MEI7912694.1 amino acid adenylation domain-containing protein [Verrucomicrobiota bacterium] diamond 1230 81.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
28633064 28633064 PRJNA793147_P_NODE_49547_length_238_cov_1.295858_g49281_i0 PRJNA793147 49547 238 1.295858 3.08414204 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 166 1.06e-46   NR MEN9631754.1 2026799 g49281 i0 93.7 2.98739495798319 79 5 99.6 0 237 1 348 426 MEN9631754.1 Xanthan lyase precursor [Verrucomicrobiota bacterium] diamond 711 166 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;