RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA793147" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA793147 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26736834 26736834 PRJNA793147_P_NODE_63641_length_209_cov_7.307143_g63375_i0 PRJNA793147 63641 209 7.307143 15.27192887 uncultured Desulfobulbus sp. 239745 Bacteria Bacteria 44.3 7.93e-4   NR WP_297956740.1 239745 g63375 i0 47.6 0.602870813397129 42 22 60.3 0 46 171 26 67 WP_297956740.1 hypothetical protein [uncultured Desulfobulbus sp.] diamond 126 44.3 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae Desulfobulbus uncultured Desulfobulbus sp.
28294625 28294625 PRJNA793147_P_NODE_57666_length_229_cov_1.800000_g57400_i0 PRJNA793147 57666 229 1.8 4.122 root 1 Root_unresolved Root_unresolved 99.4 3.25e-22   NR WP_020677775.1 225196 g57400 i0 64.5 2.98689956331878 76 23 99.6 1 1 228 222 293 WP_020677775.1 carboxyl transferase domain-containing protein [Geopsychrobacter electrodiphilus] diamond 684 100 0.994 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Geopsychrobacteraceae Geopsychrobacter Geopsychrobacter electrodiphilus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;