RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA793147", tax_phylum = "Campylobacterota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 4 ✖

tax_phylum 1

  • Campylobacterota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA793147 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7156160 7156160 PRJNA793147_P_NODE_36086_length_280_cov_1.364929_g35820_i0 PRJNA793147 36086 280 1.364929 3.8218012 Pseudomonadati 3379134 Bacteria Bacteria 132 1.37e-37   NR WP_240369555.1 195 g35820 i0 93.1 3.85714285714286 72 5 77.1 0 1 216 41 112 WP_240369555.1 hypothetical protein, partial [Campylobacter coli] diamond 1080 132 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter coli
7594026 7594026 PRJNA793147_P_NODE_36706_length_277_cov_2.149038_g36440_i0 PRJNA793147 36706 277 2.149038 5.95283526 Campylobacter 194 Bacteria Bacteria 52.8 0.025   NTclustered gi|1752751060|gb|CP044176.1| 195 g36440 i0 100 2.93140794223827 28 0 10 0 228 255 7182 7209 Campylobacter coli strain AR-0411 plasmid pAR-0411, complete sequence blastn 812 52.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter coli
12695445 12695445 PRJNA793147_P_NODE_16550_length_414_cov_2.301449_g16284_i0 PRJNA793147 16550 414 2.301449 9.52799886 Pseudomonadati 3379134 Bacteria Bacteria 765 0   NTclustered gi|1226876681|gb|CP022559.1| 197 g16284 i0 100 100 414 0 100 0 1 414 701239 700826 Campylobacter jejuni strain 11168H/araE chromosome, complete genome blastn 41400 765 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
19067632 19067632 PRJNA793147_P_NODE_4675_length_855_cov_4.408397_g4461_i0 PRJNA793147 4675 855 4.408397 37.69179435 root 1 Root_unresolved Root_unresolved 1580 0   NTclustered gi|1226876681|gb|CP022559.1| 197 g4461 i0 100 100 855 0 100 0 1 855 698909 698055 Campylobacter jejuni strain 11168H/araE chromosome, complete genome blastn 85500 1580 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;