RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

1 row where bioproject = "PRJNA792582" and tax_phylum = "Candidatus Harrisoniibacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Harrisoniibacteriota · 1 ✖

tax_clade 1

bioproject 1

  • PRJNA792582 · 1 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31001729 31001729 PRJNA792582_P_NODE_44514_length_265_cov_2.656250_g43700_i0 PRJNA792582 44514 265 2.65625 7.0390625 Candidatus Harrisonbacteria bacterium CG1 2528272 Bacteria Bacteria 42.7 0.0385   NR PIR86899.1 1974587 g43700 i0 34.7 0.815094339622642 72 41 74.7 1 219 22 29 100 PIR86899.1 MAG: hypothetical protein COU11_03535 [Candidatus Harrisonbacteria bacterium CG10_big_fil_rev_8_21_14_0_10_49_15] diamond 216 42.7 1 Bacteria Bacteria candidate phyla   Candidatus Harrisoniibacteriota         Candidatus Harrisonbacteria bacterium CG10_big_fil_rev_8_21_14_0_10_49_15

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;