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contig_metadata

21 rows where bioproject = "PRJNA792582", tax_kingdom = "Pseudomonadati" and tax_phylum = "Myxococcota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 21 ✖

tax_kingdom 1

  • Pseudomonadati · 21 ✖

bioproject 1

  • PRJNA792582 · 21 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2052758 2052758 PRJNA792582_P_NODE_21702_length_370_cov_0.973064_g20888_i0 PRJNA792582 21702 370 0.973064 3.6003368 Pajaroellobacter abortibovis 1882918 Bacteria Bacteria 645 1.2699999999999995e-180   NTclustered gi|1127377833|gb|CP016908.1| 1882918 g20888 i0 98.108 134.078378378378 370 7 100 0 1 370 1551251 1550882 Pajaroellobacter abortibovis strain BTF92-0548A/99-0131, genome blastn 49609 645 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Pajaroellobacter Pajaroellobacter abortibovis
2491055 2491055 PRJNA792582_P_NODE_55422_length_245_cov_0.895349_g54608_i0 PRJNA792582 55422 245 0.895349 2.19360505 Pseudomonadati 3379134 Bacteria Bacteria 375 1.16e-99   NTclustered gi|47778677|gb|AY033403.2| 34 g54608 i0 93.725 24.0081632653061 255 6 100 10 1 245 2419 2673 Myxococcus xanthus USC3-1p, USC3-2p, USC3-3p, milk-clotting protease USC3-4p (cltC), and USC3-5p genes, complete cds blastn 5882 377 0.994694960212202 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus xanthus
5880338 5880338 PRJNA792582_P_NODE_28825_length_322_cov_0.763052_g28011_i0 PRJNA792582 28825 322 0.763052 2.45702744 Myxococcus xanthus 34 Bacteria Bacteria 586 6.699999999999998e-163   NTclustered gi|13959812|gb|AY033405.1| 34 g28011 i0 99.383 100.006211180124 324 0 100 2 1 322 476 799 Myxococcus xanthus USC5-1p and USC5-2p genes, complete cds blastn 32202 586 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus xanthus
9705341 9705341 PRJNA792582_P_NODE_45248_length_263_cov_2.231579_g44434_i0 PRJNA792582 45248 263 2.231579 5.86905277 Sorangium cellulosum 56 Bacteria Bacteria 226 1.3399999999999998e-54   NTclustered gi|1566495190|gb|CP012670.1| 56 g44434 i0 91.018 55.9125475285171 167 15 63 0 97 263 7711872 7711706 Sorangium cellulosum strain So ceGT47 chromosome, complete genome blastn 14705 226 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum
16518485 16518485 PRJNA792582_P_NODE_55413_length_245_cov_0.895349_g54599_i0 PRJNA792582 55413 245 0.895349 2.19360505 Pseudomonadati 3379134 Bacteria Bacteria 156 1.64e-33   NTclustered gi|2621786039|emb|OY782497.1| 2818507 g54599 i0 78.862 18.1551020408163 246 40 99 11 3 245 2487536 2487772 MAG: Myxococcota bacterium isolate 0c961c99-2a7e-4543-b017-306f11f6fc1d genome assembly, chromosome: 1 blastn 4448 156 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
17355319 17355319 PRJNA792582_P_NODE_42914_length_270_cov_1.284264_g42100_i0 PRJNA792582 42914 270 1.284264 3.4675128 Pseudomyxococcus hansupus 1297742 Bacteria Bacteria 169 2.36e-37   NTclustered gi|891158403|gb|CP012109.1| 1297742 g42100 i0 79.916 11.1740740740741 239 41 87 6 37 270 4240520 4240756 Myxococcus hansupus strain mixupus chromosome, complete genome blastn 3017 169 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Pseudomyxococcus Pseudomyxococcus hansupus
21179595 21179595 PRJNA792582_P_NODE_49357_length_251_cov_2.589888_g48543_i0 PRJNA792582 49357 251 2.589888 6.50061888 Nannocystis punicea 2995304 Bacteria Bacteria 200 7.679999999999999e-47   NTclustered gi|2415023655|gb|CP114040.1| 2995304 g48543 i0 82.278 90.5697211155378 237 36 94 6 2 235 5862918 5862685 Nannocystis poenicansa strain FL3 chromosome, complete genome blastn 22733 200 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae Nannocystis Nannocystis punicea
23730091 23730091 PRJNA792582_P_NODE_56859_length_244_cov_0.900585_g56045_i0 PRJNA792582 56859 244 0.900585 2.1974274 root 1 Root_unresolved Root_unresolved 56.6 4.75e-7   NR WP_012236970.1 56 g56045 i0 43.8 6.70081967213115 73 41 89.8 0 225 7 97 169 WP_012236970.1 serine/threonine protein kinase [Sorangium cellulosum] diamond 1635 56.6 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum
25003651 25003651 PRJNA792582_P_NODE_57280_length_243_cov_1.264706_g56466_i0 PRJNA792582 57280 243 1.264706 3.07323558 Polyangium aurulentum 2567896 Bacteria Bacteria 274 4.29e-69   NTclustered gi|2235996827|gb|CP079217.1| 2567896 g56466 i0 86.939 106.987654320988 245 30 100 2 1 243 443435 443191 Polyangium aurulentum strain SDU3-1 chromosome, complete genome blastn 25998 274 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Polyangium Polyangium aurulentum
26927207 26927207 PRJNA792582_P_NODE_40182_length_277_cov_1.588235_g39368_i0 PRJNA792582 40182 277 1.588235 4.39941095 Myxococcota bacterium 2818507 Bacteria Bacteria 48.5 5.45e-5   NR MEC8422185.1 2818507 g39368 i0 40.2 0.888086642599278 82 49 88.8 0 26 271 4 85 MEC8422185.1 hypothetical protein [Myxococcota bacterium] diamond 246 48.5 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
27496228 27496228 PRJNA792582_P_NODE_50423_length_250_cov_1.740113_g49609_i0 PRJNA792582 50423 250 1.740113 4.3502825 Sorangium cellulosum 56 Bacteria Bacteria 50.1 7.66e-6   NR KYF55844.1 56 g49609 i0 52.4 0.504 42 17 46.8 1 2 118 32 73 KYF55844.1 hypothetical protein BE08_04980 [Sorangium cellulosum] diamond 126 50.1 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum
27780465 27780465 PRJNA792582_P_NODE_51684_length_249_cov_0.875000_g50870_i0 PRJNA792582 51684 249 0.875 2.17875 Polyangiaceae bacterium 2268199 Bacteria Bacteria 62.4 4.67e-9   NR HWL88207.1 2268199 g50870 i0 50.9 1.26506024096386 55 27 66.3 0 83 247 60 114 HWL88207.1 thiamine pyrophosphate-binding protein [Polyangiaceae bacterium] diamond 315 62.4 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
28885298 28885298 PRJNA792582_P_NODE_22428_length_364_cov_1.202749_g21614_i0 PRJNA792582 22428 364 1.202749 4.37800636 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 69.7 6.78e-12   NR MRR56327.1 2026735 g21614 i0 69.8 1.1043956043956 43 13 35.4 0 355 227 138 180 MRR56327.1 peptidoglycan-associated lipoprotein Pal [Deltaproteobacteria bacterium] diamond 402 69.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29043450 29043450 PRJNA792582_P_NODE_43248_length_269_cov_1.397959_g42434_i0 PRJNA792582 43248 269 1.397959 3.76050971 Myxococcales bacterium 2026763 Bacteria Bacteria 44.3 0.0153   NR MCA9522042.1 2026763 g42434 i0 34.5 1.6728624535316 84 41 87 3 257 24 879 954 MCA9522042.1 tetratricopeptide repeat protein [Myxococcales bacterium] diamond 450 44.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
29769388 29769388 PRJNA792582_P_NODE_47391_length_257_cov_1.869565_g46577_i0 PRJNA792582 47391 257 1.869565 4.80478205 Polyangiaceae bacterium 2268199 Bacteria Bacteria 43.5 0.0227   NR HEX2870986.1 2268199 g46577 i0 38.5 0.75875486381323 65 34 68.9 2 187 11 158 222 HEX2870986.1 c-type cytochrome [Polyangiaceae bacterium] diamond 195 43.5 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
30653962 30653962 PRJNA792582_P_NODE_61033_length_210_cov_4.058394_g60219_i0 PRJNA792582 61033 210 4.058394 8.5226274 Kofleriaceae bacterium 2212474 Bacteria Bacteria 43.1 0.0172   NR MEO7732607.1 2212474 g60219 i0 45.5 0.628571428571429 44 17 62.9 2 142 11 338 374 MEO7732607.1 hypothetical protein [Kofleriaceae bacterium] diamond 132 43.1 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
31096333 31096333 PRJNA792582_P_NODE_44895_length_264_cov_2.246073_g44081_i0 PRJNA792582 44895 264 2.246073 5.92963272 Cystobacter sp. 1965334 Bacteria Bacteria 42 0.0426   NR MET0405238.1 1965334 g44081 i0 35.8 0.761363636363636 67 43 76.1 0 52 252 9 75 MET0405238.1 hypothetical protein [Cystobacter sp.] diamond 201 42 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Cystobacter Cystobacter sp.
31285958 31285958 PRJNA792582_P_NODE_35915_length_288_cov_2.330233_g35101_i0 PRJNA792582 35915 288 2.330233 6.71107104 Polyangiaceae bacterium 2268199 Bacteria Bacteria 43.9 0.0242   NR MEB2310536.1 2268199 g35101 i0 63.9 0.375 36 10 36.5 2 254 150 187 220 MEB2310536.1 apolipoprotein N-acyltransferase [Polyangiaceae bacterium] diamond 108 43.9 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
31918700 31918700 PRJNA792582_P_NODE_36217_length_288_cov_0.990698_g35403_i0 PRJNA792582 36217 288 0.990698 2.85321024 Archangium sp. 1872627 Bacteria Bacteria 44.3 0.0167   NR WP_414641468.1 1872627 g35403 i0 34.8 0.927083333333333 89 36 90.6 4 272 12 36 104 WP_414641468.1 RCC1 domain-containing protein, partial [Archangium sp.] diamond 267 44.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium sp.
32140244 32140244 PRJNA792582_P_NODE_54518_length_246_cov_0.890173_g53704_i0 PRJNA792582 54518 246 0.890173 2.18982558 Myxococcales bacterium 2026763 Bacteria Bacteria 99 4.21e-22   NR MCA1826806.1 2026763 g53704 i0 57.3 5 82 35 100 0 1 246 225 306 MCA1826806.1 2-oxo acid dehydrogenase subunit E2 [Myxococcales bacterium] diamond 1230 99 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
32803412 32803412 PRJNA792582_P_NODE_60620_length_229_cov_2.833333_g59806_i0 PRJNA792582 60620 229 2.833333 6.48833257 Paraliomyxa miuraensis 376150 Bacteria Bacteria 125 9.74e-34   NR WP_266221121.1 376150 g59806 i0 84.2 0.995633187772926 76 12 99.6 0 229 2 143 218 WP_266221121.1 queuosine precursor transporter [Paraliomyxa miuraensis] diamond 228 125 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales   Paraliomyxa Paraliomyxa miuraensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;