RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA792582", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 3 ✖

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA792582 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5043438 5043438 PRJNA792582_P_NODE_14144_length_456_cov_1.932115_g13331_i0 PRJNA792582 14144 456 1.932115 8.8104444 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 811 0   NTclustered gi|399764274|gb|JQ271785.1| 1215994 g13331 i0 99.113 15.1008771929825 451 4 99 0 6 456 19 469 Tubulinea group 04 sp. BCHM5 18S ribosomal RNA gene, partial sequence blastn 6886 817 0.99265605875153 Eukaryota Amoebozoa   Tubulinea         Tubulinea group 04 sp. BCHM5
10980800 10980800 PRJNA792582_P_NODE_22469_length_363_cov_4.862069_g21655_i0 PRJNA792582 22469 363 4.862069 17.64931047 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 217 1.15e-51   NTclustered gi|511487963|gb|JX898537.1| 1260765 g21655 i0 80.936 26.7988980716253 299 35 79 16 1 285 291 1 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 9728 217 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba
22892997 22892997 PRJNA792582_P_NODE_32238_length_304_cov_2.956710_g31424_i0 PRJNA792582 32238 304 2.95671 8.9883984 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 562 1.06e-155   NTclustered gi|399764264|gb|JQ271775.1| 1215986 g31424 i0 100 6.1875 304 0 100 0 1 304 675 978 Tubulinea group 02 sp. 1HFKJ 18S ribosomal RNA gene, partial sequence blastn 1881 562 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea group 02 sp. 1HFKJ

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;