RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA789095", tax_phylum = "Myxococcota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA789095 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3322192 3322192 PRJNA789095_P_NODE_52063_length_281_cov_1.394231_g50729_i0 PRJNA789095 52063 281 1.394231 3.91778911 Labilithrix luteola 1391654 Bacteria Bacteria 344 3.82e-90   NTclustered gi|913610804|gb|CP012333.1| 1391654 g50729 i0 88.889 117.928825622776 279 31 99 0 3 281 6622129 6622407 Labilithrix luteola strain DSM 27648, complete genome blastn 33138 344 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
26904833 26904833 PRJNA789095_P_NODE_56681_length_270_cov_6.106599_g55347_i0 PRJNA789095 56681 270 6.106599 16.4878173 Bacteria 2 Bacteria Bacteria 63.2 3.34e-9   NR MAC28150.1 2026763 g55347 i0 65.3 2.27777777777778 49 17 54.4 0 149 3 715 763 MAC28150.1 histidine kinase [Myxococcales bacterium] diamond 615 63.5 0.995275590551181 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
28894462 28894462 PRJNA789095_P_NODE_66108_length_251_cov_0.865169_g64774_i0 PRJNA789095 66108 251 0.865169 2.17157419 Pseudomonadati 3379134 Bacteria Bacteria 74.3 2.94e-13   NR MBW2485051.1 2026735 g64774 i0 53.7 5.31872509960159 67 20 66.9 2 171 4 300 366 MBW2485051.1 asparagine--tRNA ligase [Deltaproteobacteria bacterium] diamond 1335 74.7 0.994645247657296 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;