RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA789095" and tax_phylum = "Heterolobosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA789095 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23724421 23724421 PRJNA789095_P_NODE_71679_length_245_cov_0.895349_g70345_i0 PRJNA789095 71679 245 0.895349 2.19360505 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 278 3.35e-70   NTclustered gi|290975420|ref|XM_002670395.1| 5762 g70345 i0 86.716 2.21224489795918 271 10 100 13 1 245 347 77 Naegleria gruberi VWFA domain-containing protein (NAEGRDRAFT_59701), mRNA blastn 542 278 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
26999494 26999494 PRJNA789095_P_NODE_52962_length_279_cov_1.383495_g51628_i0 PRJNA789095 52962 279 1.383495 3.85995105 Naegleria 5761 Heterolobosea other_Eukaryota 65.9 4.26e-10   NR XP_044561873.1 5763 g51628 i0 50.8 1.95698924731183 61 30 65.6 0 1 183 94 154 XP_044561873.1 uncharacterized protein FDP41_003813 [Naegleria fowleri] diamond 546 65.9 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
30970137 30970137 PRJNA789095_P_NODE_61554_length_260_cov_1.374332_g60220_i0 PRJNA789095 61554 260 1.374332 3.5732632 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 43.5 0.025   NR XP_002675919.1 5762 g60220 i0 40.6 0.738461538461539 64 35 70.4 1 28 210 430 493 XP_002675919.1 uncharacterized protein NAEGRDRAFT_80122 [Naegleria gruberi] diamond 192 43.5 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;