RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA789095" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA789095 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2047662 2047662 PRJNA789095_P_NODE_78362_length_231_cov_3.613924_g77028_i0 PRJNA789095 78362 231 3.613924 8.34816444 root 1 Root_unresolved Root_unresolved 129 1.08e-34   NR MBN1955607.1 2052143 g77028 i0 76.3 4.93506493506494 76 18 98.7 0 3 230 198 273 MBN1955607.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD [Anaerolineae bacterium] diamond 1140 130 0.992307692307692 Bacteria   Bacillati Chloroflexota Anaerolineae       Anaerolineae bacterium
30622302 30622302 PRJNA789095_P_NODE_45413_length_298_cov_3.013333_g44079_i0 PRJNA789095 45413 298 3.013333 8.97973234 Aggregatilineaceae bacterium 2952881 Bacteria Bacteria 43.5 0.0373   NR HVO71277.1 2952881 g44079 i0 30.6 0.986577181208054 98 56 95.6 3 4 288 97 185 HVO71277.1 glucose-6-phosphate dehydrogenase [Aggregatilineaceae bacterium] diamond 294 43.5 1 Bacteria   Bacillati Chloroflexota Anaerolineae Aggregatilineales Aggregatilineaceae   Aggregatilineaceae bacterium
31317620 31317620 PRJNA789095_P_NODE_1995_length_2583_cov_175.246215_g1732_i0 PRJNA789095 1995 2583 175.246215 4526.60973345 Chloroflexota bacterium 2026724 Bacteria Bacteria 302 2.63e-83   NR MEN8173077.1 2026724 g1732 i0 34.6 0.681765389082462 587 374 67.8 5 2583 832 564 1143 MEN8173077.1 reverse transcriptase domain-containing protein [Chloroflexota bacterium] diamond 1761 302 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
32235376 32235376 PRJNA789095_P_NODE_31578_length_373_cov_3.820000_g30245_i0 PRJNA789095 31578 373 3.82 14.2486 Chloroflexales bacterium ZM16-3 2496870 Bacteria Bacteria 43.9 0.0489   NR NNJ12125.1 2496870 g30245 i0 35.7 0.563002680965147 70 44 56.3 1 362 153 195 263 NNJ12125.1 hypothetical protein [Chloroflexales bacterium ZM16-3] diamond 210 43.9 1 Bacteria   Bacillati Chloroflexota Chloroflexia Chloroflexales     Chloroflexales bacterium ZM16-3

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;