RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA789095", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA789095 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12251054 12251054 PRJNA789095_P_NODE_71030_length_246_cov_0.890173_g69696_i0 PRJNA789095 71030 246 0.890173 2.18982558 Simkania sp. 34094 Bacteria Bacteria 144 8.01e-41   NR MCB1084310.1 34094 g69696 i0 88.9 0.98780487804878 81 9 98.8 0 244 2 28 108 MCB1084310.1 hypothetical protein [Simkania sp.] diamond 243 144 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae Simkania Simkania sp.
29043403 29043403 PRJNA789095_P_NODE_64348_length_254_cov_1.331492_g63014_i0 PRJNA789095 64348 254 1.331492 3.38198968 Chlamydiales bacterium 2047757 Bacteria Bacteria 126 4.889999999999998e-35   NR MCP5470420.1 2047757 g63014 i0 78.6 0.992125984251969 84 18 99.2 0 3 254 30 113 MCP5470420.1 ribosomal protein L24e family protein [Chlamydiales bacterium] diamond 252 126 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;