RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA789095", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 2 ✖

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA789095 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29705836 29705836 PRJNA789095_P_NODE_36450_length_337_cov_1.166667_g35116_i0 PRJNA789095 36450 337 1.166667 3.93166779 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 98.2 1.1699999999999997e-23   NR XP_004348720.1 1257118 g35116 i0 48.2 0.997032640949555 112 52 98.8 2 336 4 23 129 XP_004348720.1 actin binding protein [Acanthamoeba castellanii str. Neff] diamond 336 98.2 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32875537 32875537 PRJNA789095_P_NODE_66100_length_251_cov_0.865169_g64766_i0 PRJNA789095 66100 251 0.865169 2.17157419 root 1 Root_unresolved Root_unresolved 126 9.869999999999998e-32   NR XP_004338070.1 1257118 g64766 i0 69.5 5.92828685258964 82 25 98 0 250 5 191 272 XP_004338070.1 1pyrroline-5-carboxylate dehydrogenase [Acanthamoeba castellanii str. Neff] diamond 1488 126 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;