RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA789095" and tax_clade = "Amoebozoa"

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tax_phylum 3

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 8 ✖

bioproject 1

  • PRJNA789095 · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
771488 771488 PRJNA789095_P_NODE_70141_length_247_cov_0.879310_g68807_i0 PRJNA789095 70141 247 0.87931 2.1718957 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 171 6.46e-51   NR PRP73904.1 1890364 g68807 i0 92.6 0.983805668016194 81 6 98.4 0 3 245 147 227 PRP73904.1 protein phosphatase 6 catalytic subunit [Planoprotostelium fungivorum] diamond 243 171 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
16074005 16074005 PRJNA789095_P_NODE_68893_length_248_cov_0.880000_g67559_i0 PRJNA789095 68893 248 0.88 2.1824 Dictyostelium purpureum 5786 Evosea other_Eukaryota 182 2.74e-41   NTclustered gi|330799393|ref|XM_003287682.1| 5786 g67559 i0 79.839 1.8508064516129 248 50 100 0 1 248 266 513 Dictyostelium purpureum 40S ribosomal protein S2 (DICPUDRAFT_32959), partial mRNA blastn 459 182 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
27938242 27938242 PRJNA789095_P_NODE_67105_length_250_cov_0.870056_g65771_i0 PRJNA789095 67105 250 0.870056 2.17514 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 87.4 7.93e-18   NR KAH3766259.1 1580589 g65771 i0 55 0.96 80 35 94.8 1 247 11 1417 1496 KAH3766259.1 Rho guanine nucleotide exchange factor 17 [Pelomyxa schiedti] diamond 240 87.4 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
29043404 29043404 PRJNA789095_P_NODE_66888_length_250_cov_0.870056_g65554_i0 PRJNA789095 66888 250 0.870056 2.17514 Dictyostelium discoideum AX4 352472 Evosea other_Eukaryota 79.7 2.3e-15   NR XP_638196.1 352472 g65554 i0 57.1 0.756 63 27 75.6 0 193 5 4 66 XP_638196.1 G-protein subunit alpha 4 [Dictyostelium discoideum AX4] diamond 189 79.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
29705836 29705836 PRJNA789095_P_NODE_36450_length_337_cov_1.166667_g35116_i0 PRJNA789095 36450 337 1.166667 3.93166779 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 98.2 1.1699999999999997e-23   NR XP_004348720.1 1257118 g35116 i0 48.2 0.997032640949555 112 52 98.8 2 336 4 23 129 XP_004348720.1 actin binding protein [Acanthamoeba castellanii str. Neff] diamond 336 98.2 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29905133 29905133 PRJNA789095_P_NODE_64131_length_254_cov_2.657459_g62797_i0 PRJNA789095 64131 254 2.657459 6.74994586 root 1 Root_unresolved Root_unresolved 51.2 4.28e-5   NR AOW71831.1 435410 g62797 i0 45.9 4.21653543307087 61 31 69.7 2 1 177 411 471 AOW71831.1 bacterial recombinase A, partial [Cavostelium apophysatum] diamond 1071 51.2 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Cavostelium Cavostelium apophysatum
31033473 31033473 PRJNA789095_P_NODE_74015_length_243_cov_0.905882_g72681_i0 PRJNA789095 74015 243 0.905882 2.20129326 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 129 3.62e-35   NR AKT93937.1 5778 g72681 i0 80 1.93827160493827 80 16 98.8 0 2 241 111 190 AKT93937.1 ribosomal protein L2 [Vermamoeba vermiformis] diamond 471 129 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
32875537 32875537 PRJNA789095_P_NODE_66100_length_251_cov_0.865169_g64766_i0 PRJNA789095 66100 251 0.865169 2.17157419 root 1 Root_unresolved Root_unresolved 126 9.869999999999998e-32   NR XP_004338070.1 1257118 g64766 i0 69.5 5.92828685258964 82 25 98 0 250 5 191 272 XP_004338070.1 1pyrroline-5-carboxylate dehydrogenase [Acanthamoeba castellanii str. Neff] diamond 1488 126 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;