RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA788929" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA788929 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3320818 3320818 PRJNA788929_P_NODE_43263_length_238_cov_4.666667_g42602_i0 PRJNA788929 43263 238 4.666667 11.10666746 Roseimicrobium sp. ORNL1 2711231 Bacteria Bacteria 126 1.24e-24   NTclustered gi|1815841271|gb|CP049143.1| 2711231 g42602 i0 86.957 122.084033613445 115 11 48 3 23 137 5625796 5625686 Roseimicrobium sp. ORNL1 chromosome, complete genome blastn 29056 126 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Roseimicrobium Roseimicrobium sp. ORNL1
9698055 9698055 PRJNA788929_P_NODE_9068_length_604_cov_58.209040_g8417_i0 PRJNA788929 9068 604 58.20904 351.5826016 Prosthecobacter fusiformis 48464 Bacteria Bacteria 918 0   NTclustered gi|12583974|gb|AF245378.1|AF245378 48464 g8417 i0 96.092 242.081125827815 563 22 93 0 25 587 179 741 Prosthecobacter fusiformis 23S ribosomal RNA gene, partial sequence blastn 146217 918 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter fusiformis
18621069 18621069 PRJNA788929_P_NODE_43795_length_235_cov_7.753086_g43134_i0 PRJNA788929 43795 235 7.753086 18.2197521 Ereboglobus luteus 1796921 Bacteria Bacteria 56.5 0.002   NTclustered gi|1387286769|gb|CP023004.1| 1796921 g43134 i0 96.97 0.140425531914894 33 1 14 0 23 55 3303783 3303815 Ereboglobus luteus strain Ho45, complete genome blastn 33 56.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Ereboglobus Ereboglobus luteus
21172151 21172151 PRJNA788929_P_NODE_47137_length_216_cov_9.958042_g46476_i0 PRJNA788929 47137 216 9.958042 21.50937072 Luteolibacter luteus 2728835 Bacteria Bacteria 340 3.629999999999999e-89   NTclustered gi|1835317346|gb|CP051774.1| 2728835 g46476 i0 98.446 193.523148148148 193 3 89 0 23 215 3803649 3803841 Luteolibacter luteus strain G-1-1-1 chromosome, complete genome blastn 41801 340 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter luteus
23722079 23722079 PRJNA788929_P_NODE_23739_length_330_cov_21.182879_g23078_i0 PRJNA788929 23739 330 21.182879 69.9035007 Luteolibacter sp. SL250 2995170 Bacteria Bacteria 568 2.4899999999999995e-157   NTclustered gi|2381117106|gb|CP113054.1| 2995170 g23078 i0 100 252.345454545455 307 0 93 0 1 307 1966 2272 Luteolibacter sp. SL250 chromosome blastn 83274 568 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. SL250
29011976 29011976 PRJNA788929_P_NODE_31788_length_278_cov_9.507317_g31127_i0 PRJNA788929 31788 278 9.507317 26.43034126 Akkermansiaceae bacterium 2562705 Bacteria Bacteria 118 5.28e-29   NR MBJ7423871.1 2562705 g31127 i0 68.4 1.7158273381295 79 25 85.3 0 25 261 53 131 MBJ7423871.1 condensation domain protein [Akkermansiaceae bacterium] diamond 477 118 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae   Akkermansiaceae bacterium
30148290 30148290 PRJNA788929_P_NODE_44372_length_232_cov_6.559748_g43711_i0 PRJNA788929 44372 232 6.559748 15.21861536 Verrucomicrobiales bacterium 2026801 Bacteria Bacteria 90.5 7.68e-20   NR MEI7928632.1 2026801 g43711 i0 65.2 2.63793103448276 69 23 87.9 1 209 6 192 260 MEI7928632.1 DUF692 family multinuclear iron-containing protein [Verrucomicrobiales bacterium] diamond 612 90.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;