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contig_metadata

33 rows where bioproject = "PRJNA788929" and tax_phylum = "Myxococcota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 33 ✖

tax_kingdom 1

bioproject 1

  • PRJNA788929 · 33 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2045138 2045138 PRJNA788929_P_NODE_20622_length_359_cov_25.986014_g19962_i0 PRJNA788929 20622 359 25.986014 93.28979026 Labilithrix luteola 1391654 Bacteria Bacteria 560 4.57e-155   NTclustered gi|913610804|gb|CP012333.1| 1391654 g19962 i0 97.273 156.91643454039 330 9 92 0 20 349 3943936 3944265 Labilithrix luteola strain DSM 27648, complete genome blastn 56333 560 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
8422454 8422454 PRJNA788929_P_NODE_26307_length_311_cov_4.130252_g25646_i0 PRJNA788929 26307 311 4.130252 12.84508372 Myxococcota bacterium 2818507 Bacteria Bacteria 154 3.61e-42   NR MFO0726737.1 2818507 g25646 i0 81.1 0.868167202572347 90 17 86.8 0 271 2 1 90 MFO0726737.1 sigma-54 dependent transcriptional regulator [Myxococcota bacterium] diamond 270 154 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
11418113 11418113 PRJNA788929_P_NODE_19169_length_375_cov_25.341060_g18509_i0 PRJNA788929 19169 375 25.34106 95.028975 root 1 Root_unresolved Root_unresolved 52.8 0.036   NTclustered gi|2869653495|gb|CP175551.1| 33 g18509 i0 94.286 0.413333333333333 35 1 9 1 296 330 1648744 1648711 Myxococcus fulvus strain KYC1117 chromosome, complete genome blastn 155 52.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus fulvus
12248686 12248686 PRJNA788929_P_NODE_16550_length_410_cov_25.091988_g15891_i0 PRJNA788929 16550 410 25.091988 102.8771508 Pajaroellobacter abortibovis 1882918 Bacteria Bacteria 122 2.96e-23   NTclustered gi|1127377833|gb|CP016908.1| 1882918 g15891 i0 90.526 48.0317073170732 95 5 23 3 25 117 1550925 1550833 Pajaroellobacter abortibovis strain BTF92-0548A/99-0131, genome blastn 19693 122 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Pajaroellobacter Pajaroellobacter abortibovis
13523276 13523276 PRJNA788929_P_NODE_40671_length_245_cov_0.895349_g40010_i0 PRJNA788929 40671 245 0.895349 2.19360505 Myxococcia 32015 Bacteria Bacteria 65.1 5.03e-10   NR OQX68942.1 1970199 g40010 i0 55.8 2.28979591836735 52 23 63.7 0 207 52 313 364 OQX68942.1 MAG: hypothetical protein B6A08_07365 [Sorangiineae bacterium NIC37A_2] diamond 561 65.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Sorangiineae bacterium NIC37A_2
14798149 14798149 PRJNA788929_P_NODE_41172_length_244_cov_0.900585_g40511_i0 PRJNA788929 41172 244 0.900585 2.1974274 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 63.2 2.27e-9   NR MBI2392116.1 2026735 g40511 i0 51.3 0.983606557377049 80 34 98.4 2 3 242 38 112 MBI2392116.1 DUF4912 domain-containing protein [Deltaproteobacteria bacterium] diamond 240 63.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
20340754 20340754 PRJNA788929_P_NODE_43536_length_236_cov_16.509202_g42875_i0 PRJNA788929 43536 236 16.509202 38.96171672 root 1 Root_unresolved Root_unresolved 278 3.2100000000000005e-70   NTclustered gi|2698045512|gb|CP089929.1| 2741070 g42875 i0 90.566 195.991525423729 212 17 89 2 27 236 7290011 7289801 Pendulispora rubella strain MSr11368 chromosome, complete genome blastn 46254 279 0.996415770609319 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora rubella
21172097 21172097 PRJNA788929_P_NODE_4317_length_976_cov_72.470653_g3808_i0 PRJNA788929 4317 976 72.470653 707.31357328 Polyangia bacterium 3058050 Bacteria Bacteria 140 1.05e-35   NR HXU61644.1 3058050 g3808 i0 37.3 1.41700819672131 233 126 67 8 896 243 37 264 HXU61644.1 spherulation-specific family 4 protein [Polyangia bacterium] diamond 1383 140 1 Bacteria   Pseudomonadati Myxococcota         Polyangia bacterium
22892071 22892071 PRJNA788929_P_NODE_42938_length_239_cov_13.457831_g42277_i0 PRJNA788929 42938 239 13.457831 32.16421609 Sorangium 39643 Bacteria Bacteria 278 3.2600000000000004e-70   NTclustered gi|1566478966|gb|CP012672.1| 56 g42277 i0 91.96 141.058577405858 199 14 82 2 21 217 3692314 3692116 Sorangium cellulosum strain So ce836 chromosome, complete genome blastn 33713 278 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum
23722491 23722491 PRJNA788929_P_NODE_5919_length_796_cov_56.409405_g5316_i0 PRJNA788929 5919 796 56.409405 449.0188638 Pseudomonadati 3379134 Bacteria Bacteria 146 3.05e-36   NR WP_309896008.1 1872627 g5316 i0 45.7 7.98241206030151 175 76 60.3 2 727 248 403 573 WP_309896008.1 LysM peptidoglycan-binding domain-containing protein [Archangium sp.] diamond 6354 146 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium sp.
24166044 24166044 PRJNA788929_P_NODE_49519_length_201_cov_9.406250_g48858_i0 PRJNA788929 49519 201 9.40625 18.9065625 Stigmatella 40 Bacteria Bacteria 219 1.6299999999999999e-52   NTclustered gi|507148216|ref|NR_103023.1| 41 g48858 i0 89.714 234.940298507463 175 13 86 5 30 201 42 214 Stigmatella aurantiaca strain DW4/3-1 23S ribosomal RNA gene, complete sequence blastn 47223 219 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Stigmatella Stigmatella aurantiaca
25440844 25440844 PRJNA788929_P_NODE_13920_length_456_cov_36.297650_g13262_i0 PRJNA788929 13920 456 36.29765 165.517284 Stigmatella 40 Bacteria Bacteria 673 0   NTclustered gi|507148216|ref|NR_103023.1| 41 g13262 i0 95.913 201.508771929825 416 16 91 1 18 432 1596 1181 Stigmatella aurantiaca strain DW4/3-1 23S ribosomal RNA gene, complete sequence blastn 91888 673 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Stigmatella Stigmatella aurantiaca
26895712 26895712 PRJNA788929_P_NODE_40221_length_246_cov_0.890173_g39560_i0 PRJNA788929 40221 246 0.890173 2.18982558 Polyangiales bacterium 3034171 Bacteria Bacteria 116 3.8599999999999998e-28   NR MFO0652507.1 3034171 g39560 i0 72 1 82 22 98.8 1 2 244 264 345 MFO0652507.1 hypothetical protein [Polyangiales bacterium] diamond 246 116 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales     Polyangiales bacterium
26999490 26999490 PRJNA788929_P_NODE_48002_length_211_cov_4.463768_g47341_i0 PRJNA788929 48002 211 4.463768 9.41855048 Bacteria 2 Bacteria Bacteria 63.2 1.53e-9   NR WP_002612798.1 41 g47341 i0 58.2 3.27014218009479 55 18 78.2 1 40 204 245 294 WP_002612798.1 DNA methyltransferase [Stigmatella aurantiaca] diamond 690 63.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Stigmatella Stigmatella aurantiaca
27148090 27148090 PRJNA788929_P_NODE_20642_length_359_cov_16.090909_g19982_i0 PRJNA788929 20642 359 16.090909 57.76636331 Myxococcales bacterium 2026763 Bacteria Bacteria 158 2.64e-46   NR MCA9627493.1 2026763 g19982 i0 80.4 0.768802228412256 92 18 76.9 0 3 278 109 200 MCA9627493.1 superoxide dismutase family protein [Myxococcales bacterium] diamond 276 158 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
27179885 27179885 PRJNA788929_P_NODE_40962_length_244_cov_3.602339_g40301_i0 PRJNA788929 40962 244 3.602339 8.78970716 Polyangiales bacterium 3034171 Bacteria Bacteria 56.2 6.39e-7   NR MET0342045.1 3034171 g40301 i0 49.2 0.799180327868853 65 33 79.9 0 21 215 130 194 MET0342045.1 DUF1592 domain-containing protein [Polyangiales bacterium] diamond 195 56.2 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales     Polyangiales bacterium
27401493 27401493 PRJNA788929_P_NODE_45443_length_227_cov_3.571429_g44782_i0 PRJNA788929 45443 227 3.571429 8.10714383 Archangium gephyra 48 Bacteria Bacteria 119 5.500000000000001e-30   NR PZR18676.1 48 g44782 i0 92.4 0.872246696035242 66 5 87.2 0 15 212 309 374 PZR18676.1 MAG: adenosylmethionine--8-amino-7-oxononanoate transaminase [Archangium gephyra] diamond 198 119 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium gephyra
27717516 27717516 PRJNA788929_P_NODE_40604_length_245_cov_0.895349_g39943_i0 PRJNA788929 40604 245 0.895349 2.19360505 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 111 2.17e-26   NR MBN2714360.1 2026735 g39943 i0 60.5 1.98367346938776 81 32 99.2 0 2 244 597 677 MBN2714360.1 glycosyltransferase [Deltaproteobacteria bacterium] diamond 486 111 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27780390 27780390 PRJNA788929_P_NODE_14464_length_445_cov_54.870968_g13805_i0 PRJNA788929 14464 445 54.870968 244.1758076 Myxococcota bacterium 2818507 Bacteria Bacteria 45.1 0.0424   NR HRE87745.1 2818507 g13805 i0 69.2 0.512359550561798 26 8 17.5 0 382 305 191 216 HRE87745.1 hypothetical protein [Myxococcota bacterium] diamond 228 45.1 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
27874917 27874917 PRJNA788929_P_NODE_4265_length_984_cov_11.239297_g3760_i0 PRJNA788929 4265 984 11.239297 110.59468248 Myxococcales bacterium 2026763 Bacteria Bacteria 321 7.26e-97   NR MCB9535739.1 2026763 g3760 i0 47 2.21646341463415 366 140 95.7 5 959 18 730 1093 MCB9535739.1 hypothetical protein [Myxococcales bacterium] diamond 2181 321 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
29169660 29169660 PRJNA788929_P_NODE_19729_length_368_cov_48.155932_g19069_i0 PRJNA788929 19729 368 48.155932 177.21382976 Kofleriaceae bacterium 2212474 Bacteria Bacteria 95.1 1.32e-20   NR HEU0036994.1 2212474 g19069 i0 66.7 3.61141304347826 54 18 44 0 348 187 262 315 HEU0036994.1 DUF6748 domain-containing protein [Kofleriaceae bacterium] diamond 1329 95.1 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
29421909 29421909 PRJNA788929_P_NODE_27729_length_301_cov_27.850877_g27068_i0 PRJNA788929 27729 301 27.850877 83.83113977 Pajaroellobacter abortibovis 1882918 Bacteria Bacteria 48.1 9.2e-4   NR WP_075276368.1 1882918 g27068 i0 38.6 0.697674418604651 70 39 67.8 2 284 81 428 495 WP_075276368.1 bifunctional SulP family inorganic anion transporter/carbonic anhydrase [Pajaroellobacter abortibovis] diamond 210 48.1 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Pajaroellobacter Pajaroellobacter abortibovis
30148293 30148293 PRJNA788929_P_NODE_8172_length_647_cov_26.433798_g7525_i0 PRJNA788929 8172 647 26.433798 171.02667306 Myxococcales bacterium 2026763 Bacteria Bacteria 95.5 5.21e-19   NR MCB9718123.1 2026763 g7525 i0 47.3 0.431221020092736 93 49 43.1 0 637 359 321 413 MCB9718123.1 hypothetical protein [Myxococcales bacterium] diamond 279 95.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
30306991 30306991 PRJNA788929_P_NODE_43812_length_235_cov_6.438272_g43151_i0 PRJNA788929 43812 235 6.438272 15.1299392 Hyalangium minutum 394096 Bacteria Bacteria 51.2 3.33e-5   NR WP_044186047.1 394096 g43151 i0 71 0.395744680851064 31 9 39.6 0 98 6 437 467 WP_044186047.1 serine/threonine protein kinase [Hyalangium minutum] diamond 93 51.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Hyalangium Hyalangium minutum
30473823 30473823 PRJNA788929_P_NODE_38473_length_250_cov_0.870056_g37812_i0 PRJNA788929 38473 250 0.870056 2.17514 Bacteria 2 Bacteria Bacteria 97.4 2.39e-21   NR MFO0726622.1 2818507 g37812 i0 63.2 1.86 76 27 90 1 244 20 917 992 MFO0726622.1 NADAR domain-containing protein [Myxococcota bacterium] diamond 465 97.4 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
30496165 30496165 PRJNA788929_P_NODE_12853_length_481_cov_6.821078_g12196_i0 PRJNA788929 12853 481 6.821078 32.80938518 Myxococcota bacterium 2818507 Bacteria Bacteria 66.6 2.11e-9   NR MFO0722507.1 2818507 g12196 i0 38.6 1.26611226611227 114 67 70.5 3 352 14 2 113 MFO0722507.1 hypothetical protein [Myxococcota bacterium] diamond 609 66.6 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
30496180 30496180 PRJNA788929_P_NODE_42593_length_241_cov_0.916667_g41932_i0 PRJNA788929 42593 241 0.916667 2.20916747 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 115 4.95e-28   NR MBI4815232.1 2026735 g41932 i0 69.6 0.983402489626556 79 24 98.3 0 239 3 112 190 MBI4815232.1 serine/threonine protein kinase [Deltaproteobacteria bacterium] diamond 237 115 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
30536881 30536881 PRJNA788929_P_NODE_18733_length_380_cov_31.345277_g18073_i0 PRJNA788929 18733 380 31.345277 119.1120526 Bacteria 2 Bacteria Bacteria 59.3 2.95e-7   NR MBP7125772.1 2818507 g18073 i0 35.5 2.20263157894737 110 49 75.8 5 305 18 2822 2923 MBP7125772.1 hypothetical protein [Myxococcota bacterium] diamond 837 59.3 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
30970126 30970126 PRJNA788929_P_NODE_9954_length_568_cov_41.624242_g9301_i0 PRJNA788929 9954 568 41.624242 236.42569456 Archangium gephyra 48 Bacteria Bacteria 48.9 0.00503   NR WP_375767157.1 48 g9301 i0 48 0.264084507042254 50 24 25.4 1 24 167 293 342 WP_375767157.1 M64 family metallopeptidase [Archangium gephyra] diamond 150 48.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium gephyra
31105444 31105444 PRJNA788929_P_NODE_5915_length_796_cov_173.596127_g5313_i0 PRJNA788929 5915 796 173.596127 1381.82517092 Myxococcales 29 Bacteria Bacteria 151 3.13e-38   NR WP_309896008.1 1872627 g5313 i0 47.4 9.24120603015075 175 73 60.3 2 689 210 403 573 WP_309896008.1 LysM peptidoglycan-binding domain-containing protein [Archangium sp.] diamond 7356 152 0.993421052631579 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium sp.
31927835 31927835 PRJNA788929_P_NODE_5917_length_796_cov_149.889350_g5313_i1 PRJNA788929 5917 796 149.88935 1193.119226 Pseudomonadati 3379134 Bacteria Bacteria 149 2.21e-37   NR WP_309896008.1 1872627 g5313 i1 46.3 7.26633165829146 175 75 60.3 2 108 587 403 573 WP_309896008.1 LysM peptidoglycan-binding domain-containing protein [Archangium sp.] diamond 5784 150 0.993333333333333 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium sp.
32171965 32171965 PRJNA788929_P_NODE_33658_length_269_cov_8.729592_g32997_i0 PRJNA788929 33658 269 8.729592 23.48260248 Myxococcales bacterium 2026763 Bacteria Bacteria 62 7.6e-9   NR MBL8635915.1 2026763 g32997 i0 100 0.323420074349442 29 0 32.3 0 248 162 331 359 MBL8635915.1 hypothetical protein [Myxococcales bacterium] diamond 87 62 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
32266902 32266902 PRJNA788929_P_NODE_3938_length_1035_cov_48.241164_g3466_i0 PRJNA788929 3938 1035 48.241164 499.2960474 Sorangium cellulosum 56 Bacteria Bacteria 256 4.0600000000000005e-80   NR WP_236644154.1 56 g3466 i0 48.9 2.34782608695652 268 105 75.7 12 1013 231 55 297 WP_236644154.1 hypothetical protein [Sorangium cellulosum] diamond 2430 256 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;