RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA788929", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 8 ✖

tax_kingdom 1

  • Pseudomonadati · 8 ✖

bioproject 1

  • PRJNA788929 · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2489781 2489781 PRJNA788929_P_NODE_37842_length_251_cov_0.865169_g37181_i0 PRJNA788929 37842 251 0.865169 2.17157419 root 1 Root_unresolved Root_unresolved 464 2.47e-126   NTclustered gi|1887121882|gb|CP059971.1| 197 g37181 i0 100 100 251 0 100 0 1 251 101659 101909 Campylobacter jejuni strain C34 chromosome, complete genome blastn 25100 464 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
3765974 3765974 PRJNA788929_P_NODE_28203_length_298_cov_23.746667_g27542_i0 PRJNA788929 28203 298 23.746667 70.76506766 Aliarcobacter 2321111 Bacteria Bacteria 508 1.37e-139   NTclustered gi|1898125941|gb|CP060694.1| 28198 g27542 i0 100 35.1375838926174 275 0 92 0 1 275 965500 965774 Aliarcobacter cryaerophilus strain 16CS1292-4 chromosome, complete genome blastn 10471 508 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter cryaerophilus
12248842 12248842 PRJNA788929_P_NODE_26650_length_308_cov_22.868085_g25989_i0 PRJNA788929 26650 308 22.868085 70.4337018 Helicobacter pylori 210 Bacteria Bacteria 67.6 1.03e-6   NTclustered gi|2642281662|gb|CP078399.1| 210 g25989 i0 91.837 3.72727272727273 49 2 16 2 53 100 7812 7765 Helicobacter pylori strain HpGP-POR-115 chromosome, complete genome blastn 1148 67.6 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
15242511 15242511 PRJNA788929_P_NODE_12292_length_494_cov_40.247031_g11635_i0 PRJNA788929 12292 494 40.247031 198.82033314 Pseudomonadati 3379134 Bacteria Bacteria 56.5 0.004   NTclustered gi|2640430184|gb|CP079090.1| 210 g11635 i0 100 1.74898785425101 30 0 6 0 145 174 7634 7663 Helicobacter pylori strain HpGP-CAN-002 chromosome, complete genome blastn 864 56.5 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
24165889 24165889 PRJNA788929_P_NODE_28239_length_298_cov_12.031111_g27578_i0 PRJNA788929 28239 298 12.031111 35.85271078 Arcobacteraceae 2808963 Bacteria Bacteria 508 1.37e-139   NTclustered gi|1231709647|emb|LT906455.1| 28197 g27578 i0 100 337.815436241611 275 0 92 0 1 275 850714 850440 Arcobacter butzleri strain NCTC12481 genome assembly, chromosome: 1 blastn 100669 508 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter butzleri
28285205 28285205 PRJNA788929_P_NODE_38126_length_250_cov_8.423729_g37465_i0 PRJNA788929 38126 250 8.423729 21.0593225 Helicobacter pylori 210 Bacteria Bacteria 40.4 0.0223   NR GAA6875668.1 210 g37465 i0 89.7 0.348 29 3 34.8 0 151 65 11 39 GAA6875668.1 hypothetical protein Kyoto206A_4490 [Helicobacter pylori] diamond 87 40.4 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
30370116 30370116 PRJNA788929_P_NODE_45372_length_227_cov_6.772727_g44711_i0 PRJNA788929 45372 227 6.772727 15.37409029 Helicobacter pylori 210 Bacteria Bacteria 48.5 1.73e-5   NR GAA9217561.1 210 g44711 i0 90.9 0.290748898678414 22 2 29.1 0 161 96 1 22 GAA9217561.1 hypothetical protein Kyoto198A_3180 [Helicobacter pylori] diamond 66 48.5 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
30622293 30622293 PRJNA788929_P_NODE_46933_length_218_cov_4.344828_g46272_i0 PRJNA788929 46933 218 4.344828 9.47172504 Helicobacter pylori 210 Bacteria Bacteria 40.8 0.0109   NR GAA6875668.1 210 g46272 i0 93.1 0.399082568807339 29 2 39.9 0 140 54 11 39 GAA6875668.1 hypothetical protein Kyoto206A_4490 [Helicobacter pylori] diamond 87 40.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;