RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

27 rows where bioproject = "PRJNA788929", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 27 ✖

tax_kingdom 1

  • Pseudomonadati · 27 ✖

bioproject 1

  • PRJNA788929 · 27 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4597538 4597538 PRJNA788929_P_NODE_25004_length_320_cov_14.327935_g24343_i0 PRJNA788929 25004 320 14.327935 45.849392 Oligoflexales bacterium 2687297 Bacteria Bacteria 91.3 5.54e-20   NR MBF0442258.1 2687297 g24343 i0 69.5 1.021875 59 16 53.4 1 1 171 169 227 MBF0442258.1 uracil-DNA glycosylase [Oligoflexales bacterium] diamond 327 91.3 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Oligoflexales     Oligoflexales bacterium
5873039 5873039 PRJNA788929_P_NODE_39505_length_247_cov_7.563218_g38844_i0 PRJNA788929 39505 247 7.563218 18.68114846 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 115 2.41e-28   NR HLW57191.1 2081706 g38844 i0 79.7 0.898785425101215 74 15 89.9 0 23 244 231 304 HLW57191.1 DPP IV N-terminal domain-containing protein [Bacteriovoracaceae bacterium] diamond 222 115 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
7147631 7147631 PRJNA788929_P_NODE_15506_length_426_cov_28.509915_g14847_i0 PRJNA788929 15506 426 28.509915 121.4522379 Pseudomonadati 3379134 Bacteria Bacteria 221 5.269999999999999e-66   NR PZQ43275.1 349221 g14847 i0 83.6 5.40845070422535 128 20 90.1 1 406 23 341 467 PZQ43275.1 MAG: acetate--CoA ligase [Micavibrio aeruginosavorus] diamond 2304 221 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus
7147935 7147935 PRJNA788929_P_NODE_36206_length_257_cov_9.940217_g35545_i0 PRJNA788929 36206 257 9.940217 25.54635769 Peredibacter sp. HCB2-198 3383025 Bacteria Bacteria 416 7.2e-112   NTclustered gi|2867657404|gb|CP174607.1| 3383025 g35545 i0 99.561 99.5953307392996 228 1 89 0 8 235 1292764 1292537 Peredibacter sp. HCB2-198 chromosome, complete genome blastn 25596 416 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter sp. HCB2-198
7592491 7592491 PRJNA788929_P_NODE_48426_length_208_cov_8.911111_g47765_i0 PRJNA788929 48426 208 8.911111 18.53511088 Bdellovibrio 958 Bacteria Bacteria 191 3.6999999999999995e-44   NTclustered gi|2895994964|gb|CP178619.1| 3394355 g47765 i0 85.714 297.961538461538 189 18 90 8 1 185 574744 574927 Bdellovibrio sp. HCB288 chromosome, complete genome blastn 61976 191 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB288
8422728 8422728 PRJNA788929_P_NODE_43347_length_237_cov_22.640244_g42686_i0 PRJNA788929 43347 237 22.640244 53.65737828 Peredibacter starrii 28202 Bacteria Bacteria 261 3.25e-65   NTclustered gi|2631252187|gb|CP139487.1| 28202 g42686 i0 88.889 81.7679324894515 216 19 90 5 1 214 510896 510684 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 19379 261 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
8867269 8867269 PRJNA788929_P_NODE_16807_length_406_cov_40.885886_g16148_i0 PRJNA788929 16807 406 40.885886 165.99669716 Bdellovibrio 958 Bacteria Bacteria 375 2.0399999999999996e-99   NTclustered gi|1210342126|gb|CP020946.1| 959 g16148 i0 84.655 194.155172413793 391 45 94 11 2 384 2949940 2950323 Bdellovibrio bacteriovorus strain SSB218315, complete genome blastn 78827 375 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
18620920 18620920 PRJNA788929_P_NODE_33875_length_268_cov_8.015385_g33214_i0 PRJNA788929 33875 268 8.015385 21.4812318 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 180 1.08e-40   NTclustered gi|2258818259|gb|CP060220.1| 2026715 g33214 i0 91.603 61.7649253731343 131 10 49 1 138 268 3251641 3251770 MAG: Pseudobdellovibrionaceae bacterium isolate HK-STAS-BDEL-7 chromosome blastn 16553 180 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
19896422 19896422 PRJNA788929_P_NODE_44996_length_229_cov_5.865385_g44335_i0 PRJNA788929 44996 229 5.865385 13.43173165 Bdellovibrio bacteriovorus 959 Bacteria Bacteria 211 3.19e-50   NTclustered gi|2800948966|gb|CP168973.1| 959 g44335 i0 85.577 181.943231441048 208 22 89 7 4 206 1676724 1676520 Bdellovibrio bacteriovorus strain HK2 chromosome, complete genome blastn 41665 211 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
20340540 20340540 PRJNA788929_P_NODE_19436_length_372_cov_7.270903_g18776_i0 PRJNA788929 19436 372 7.270903 27.04775916 Bdellovibrio 958 Bacteria Bacteria 414 3.92e-111   NTclustered gi|2800948966|gb|CP168973.1| 959 g18776 i0 87.989 173.69623655914 358 33 95 9 20 371 815370 815723 Bdellovibrio bacteriovorus strain HK2 chromosome, complete genome blastn 64615 414 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
22446883 22446883 PRJNA788929_P_NODE_44698_length_230_cov_14.757962_g44037_i0 PRJNA788929 44698 230 14.757962 33.9433126 Bdellovibrio bacteriovorus 959 Bacteria Bacteria 316 6.599999999999998e-82   NTclustered gi|2800920897|gb|CP168968.1| 959 g44037 i0 94.231 116.139130434783 208 10 90 2 24 230 778107 778313 Bdellovibrio bacteriovorus strain Bd5 chromosome, complete genome blastn 26712 316 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
24995890 24995890 PRJNA788929_P_NODE_31280_length_281_cov_2.057692_g30619_i0 PRJNA788929 31280 281 2.057692 5.78211452 Bdellovibrio sp. qaytius 1916293 Bacteria Bacteria 206 1.88e-48   NTclustered gi|1552089877|gb|CP025734.1| 1916293 g30619 i0 85.294 0.725978647686833 204 24 70 3 24 221 2684452 2684249 Bdellovibrio sp. qaytius chromosome, complete genome blastn 204 206 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. qaytius
26958574 26958574 PRJNA788929_P_NODE_43082_length_239_cov_3.198795_g42421_i0 PRJNA788929 43082 239 3.198795 7.64512005 Micavibrio aeruginosavorus 349221 Bacteria Bacteria 61.6 6.55e-9   NR PZO88137.1 349221 g42421 i0 69.6 1.10460251046025 46 14 57.7 0 147 10 1 46 PZO88137.1 MAG: lipoyl synthase [Micavibrio aeruginosavorus] diamond 264 61.6 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus
27211528 27211528 PRJNA788929_P_NODE_23322_length_334_cov_10.448276_g22661_i0 PRJNA788929 23322 334 10.448276 34.89724184 Bdellovibrio sp. 28201 Bacteria Bacteria 54.7 6.65e-6   NR MBC7466752.1 28201 g22661 i0 41.9 1.17664670658683 62 36 55.7 0 100 285 286 347 MBC7466752.1 hypothetical protein [Bdellovibrio sp.] diamond 393 54.7 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.
27654133 27654133 PRJNA788929_P_NODE_46844_length_218_cov_9.434483_g46183_i0 PRJNA788929 46844 218 9.434483 20.56717294 Halobacteriovoraceae bacterium 2026745 Bacteria Bacteria 42.4 0.0372   NR MBC74636.1 2026745 g46183 i0 43.1 1.29357798165138 51 25 64.7 1 203 63 408 458 MBC74636.1 hypothetical protein [Halobacteriovoraceae bacterium] diamond 282 42.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Halobacteriovoraceae   Halobacteriovoraceae bacterium
27685858 27685858 PRJNA788929_P_NODE_27304_length_304_cov_10.467532_g26643_i0 PRJNA788929 27304 304 10.467532 31.82129728 Pseudobdellovibrio sp. HCB154 3386277 Bacteria Bacteria 136 5.09e-36   NR WP_409479611.1 3386277 g26643 i0 75 0.868421052631579 88 22 86.8 0 21 284 292 379 WP_409479611.1 hypothetical protein [Pseudobdellovibrio sp. HCB154] diamond 264 136 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio sp. HCB154
28222131 28222131 PRJNA788929_P_NODE_35046_length_262_cov_14.375661_g34385_i0 PRJNA788929 35046 262 14.375661 37.66423182 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 97.8 6.26e-22   NR MCB0350462.1 2053517 g34385 i0 76.8 0.641221374045801 56 13 64.1 0 21 188 309 364 MCB0350462.1 IS5 family transposase [Bdellovibrionales bacterium] diamond 168 97.8 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
28357647 28357647 PRJNA788929_P_NODE_32466_length_275_cov_2.831683_g31805_i0 PRJNA788929 32466 275 2.831683 7.78712825 Bdellovibrio 958 Bacteria Bacteria 73.2 1.06e-12   NR PIS11879.1 1975526 g31805 i0 85.7 4.18909090909091 42 6 45.8 0 252 127 508 549 PIS11879.1 MAG: RIP metalloprotease RseP [Bdellovibrio sp. CG10_big_fil_rev_8_21_14_0_10_47_8] diamond 1152 73.2 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. CG10_big_fil_rev_8_21_14_0_10_47_8
29074998 29074998 PRJNA788929_P_NODE_11748_length_509_cov_25.357798_g11093_i0 PRJNA788929 11748 509 25.357798 129.07119182 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 84.7 1.54e-15   NR MEZ4749592.1 3034175 g11093 i0 44.6 0.595284872298625 101 52 58.9 2 31 330 303 400 MEZ4749592.1 SDR family NAD(P)-dependent oxidoreductase [Bdellovibrionota bacterium] diamond 303 84.7 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
29705817 29705817 PRJNA788929_P_NODE_32010_length_277_cov_7.264706_g31349_i0 PRJNA788929 32010 277 7.264706 20.12323562 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 116 8.21e-28   NR MBX3020924.1 2053517 g31349 i0 66.7 0.909747292418773 84 28 91 0 2 253 75 158 MBX3020924.1 ligase-associated DNA damage response DEXH box helicase [Bdellovibrionales bacterium] diamond 252 116 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
30401741 30401741 PRJNA788929_P_NODE_7193_length_702_cov_38.481717_g6559_i0 PRJNA788929 7193 702 38.481717 270.14165334 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 273 1.8e-84   NR MBX3032370.1 2026715 g6559 i0 68.6 0.816239316239316 191 57 81.2 2 24 593 449 637 MBX3032370.1 hypothetical protein [Pseudobdellovibrionaceae bacterium] diamond 573 273 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
30653873 30653873 PRJNA788929_P_NODE_11593_length_514_cov_12.897959_g10939_i0 PRJNA788929 11593 514 12.897959 66.29550926 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 139 4.32e-35   NR MFN9068120.1 2053517 g10939 i0 40.5 1.90272373540856 163 95 94 1 11 493 2 164 MFN9068120.1 aldehyde dehydrogenase family protein [Bdellovibrionales bacterium] diamond 978 139 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
31159190 31159190 PRJNA788929_P_NODE_37615_length_251_cov_18.657303_g36954_i0 PRJNA788929 37615 251 18.657303 46.82983053 Bacteriovoracia bacterium 3058048 Bacteria Bacteria 98.6 8.87e-22   NR MFP5386477.1 3058048 g36954 i0 62.7 0.800796812749004 67 24 80.1 1 27 227 482 547 MFP5386477.1 hypothetical protein [Bacteriovoracia bacterium] diamond 201 98.6 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia       Bacteriovoracia bacterium
31633872 31633872 PRJNA788929_P_NODE_22436_length_342_cov_22.739777_g21775_i0 PRJNA788929 22436 342 22.739777 77.77003734 Peredibacter starrii 28202 Bacteria Bacteria 137 2.48e-38   NR WP_321398182.1 28202 g21775 i0 59.4 0.929824561403509 106 43 93 0 23 340 97 202 WP_321398182.1 hypothetical protein [Peredibacter starrii] diamond 318 137 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
31665477 31665477 PRJNA788929_P_NODE_12997_length_477_cov_20.042079_g12340_i0 PRJNA788929 12997 477 20.042079 95.60071683 Bdellovibrio sp. 28201 Bacteria Bacteria 217 2.3800000000000002e-63   NR MBO9666431.1 28201 g12340 i0 70.5 0.918238993710692 146 41 91.8 1 35 472 616 759 MBO9666431.1 vitamin B12-dependent ribonucleotide reductase [Bdellovibrio sp.] diamond 438 217 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.
32235359 32235359 PRJNA788929_P_NODE_14038_length_454_cov_17.149606_g13380_i0 PRJNA788929 14038 454 17.149606 77.85921124 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 110 9.86e-26   NR HXH74280.1 2081706 g13380 i0 51.5 1.36123348017621 103 50 68.1 0 438 130 225 327 HXH74280.1 KpsF/GutQ family sugar-phosphate isomerase [Bacteriovoracaceae bacterium] diamond 618 110 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
32834834 32834834 PRJNA788929_P_NODE_44700_length_230_cov_14.070064_g44039_i0 PRJNA788929 44700 230 14.070064 32.3611472 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 91.7 2.5600000000000003e-22   NR MBL7555158.1 2026715 g44039 i0 98 0.665217391304348 51 1 66.5 0 68 220 1 51 MBL7555158.1 hypothetical protein [Pseudobdellovibrionaceae bacterium] diamond 153 91.7 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;