RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA788929", tax_kingdom = "Metazoa" and tax_phylum = "Echinodermata"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 5 ✖

tax_kingdom 1

  • Metazoa · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA788929 · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2489728 2489728 PRJNA788929_P_NODE_32142_length_276_cov_24.330049_g31481_i0 PRJNA788929 32142 276 24.330049 67.15093524 Ophiuroidea 7618 Echinodermata other_Eukaryota 163 1.12e-35   NTclustered gi|84043343|gb|DQ297120.1| 331101 g31481 i0 92.308 13.3333333333333 117 6 42 2 152 266 710 825 Schizostella bifurcata 28S ribosomal RNA gene, partial sequence blastn 3680 163 1 Eukaryota Opisthokonta Metazoa Echinodermata Ophiuroidea Euryalida Gorgonocephalidae Schizostella Schizostella bifurcata
12249224 12249224 PRJNA788929_P_NODE_6270_length_769_cov_19.580460_g5654_i0 PRJNA788929 6270 769 19.58046 150.5737374 Diadema antillarum 105358 Echinodermata other_Eukaryota 60.2 4.61e-4   NTclustered gi|2919559042|ref|XM_071624162.1| 105358 g5654 i0 94.872 0.35630689206762 39 0 5 2 369 406 4026 4063 PREDICTED: Diadema antillarum uncharacterized protein (LOC139712323), partial mRNA blastn 274 60.2 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Diadematoida Diadematidae Diadema Diadema antillarum
22446763 22446763 PRJNA788929_P_NODE_37138_length_253_cov_15.177778_g36477_i0 PRJNA788929 37138 253 15.177778 38.39977834 Patiria miniata 46514 Echinodermata other_Eukaryota 52.8 0.023   NTclustered gi|1944904924|ref|XM_038209276.1| 46514 g36477 i0 100 0.66403162055336 28 0 11 0 67 94 708 681 PREDICTED: Patiria miniata fibropellin-1-like (LOC119735541), mRNA blastn 168 52.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Asterinidae Patiria Patiria miniata
28538265 28538265 PRJNA788929_P_NODE_26227_length_311_cov_22.109244_g25566_i0 PRJNA788929 26227 311 22.109244 68.75974884 Apostichopus japonicus 307972 Echinodermata other_Eukaryota 55.5 2.85e-6   NR PIK56362.1 307972 g25566 i0 37.7 1.0225080385852101 106 41 81 4 8 259 725 827 PIK56362.1 putative lysosomal alpha-mannosidase [Apostichopus japonicus] diamond 318 55.5 1 Eukaryota Opisthokonta Metazoa Echinodermata Holothuroidea Aspidochirotida Stichopodidae Apostichopus Apostichopus japonicus
30243402 30243402 PRJNA788929_P_NODE_3992_length_1027_cov_53.821803_g3514_i0 PRJNA788929 3992 1027 53.821803 552.74991681 Lytechinus variegatus 7654 Echinodermata other_Eukaryota 48.9 0.0259   NR XP_041473556.1 7654 g3514 i0 29.7 0.911392405063291 111 74 32.4 3 824 492 159 265 XP_041473556.1 centrosomal protein 43-like isoform X1 [Lytechinus variegatus] diamond 936 48.9 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;