RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA788929", tax_clade = "Sar" and tax_phylum = "Endomyxa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA788929 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7148139 7148139 PRJNA788929_P_NODE_5026_length_889_cov_56.625000_g4450_i0 PRJNA788929 5026 889 56.625 503.39625 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 134 3.1e-34   NR CEP03203.1 37360 g4450 i0 40.6 2.14285714285714 155 89 51.3 1 141 596 19 173 CEP03203.1 hypothetical protein PBRA_002963 [Plasmodiophora brassicae] diamond 1905 135 0.992592592592593 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
29516694 29516694 PRJNA788929_P_NODE_4470_length_956_cov_37.650057_g3944_i0 PRJNA788929 4470 956 37.650057 359.93454492 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 164 3.95e-41   NR CEO99499.1 37360 g3944 i0 49.7 0.473849372384937 151 76 47.4 0 494 946 2008 2158 CEO99499.1 hypothetical protein PBRA_007232 [Plasmodiophora brassicae] diamond 453 164 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
30022272 30022272 PRJNA788929_P_NODE_18171_length_387_cov_15.308917_g17511_i0 PRJNA788929 18171 387 15.308917 59.24550879 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 83.6 1.63e-17   NR CEO99081.1 37360 g17511 i0 45.3 1.48062015503876 95 47 73.6 1 363 79 52 141 CEO99081.1 hypothetical protein PBRA_007195 [Plasmodiophora brassicae] diamond 573 83.6 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;