RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA788929", tax_clade = "FCB group" and tax_phylum = "Chlorobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA788929 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18621094 18621094 PRJNA788929_P_NODE_45615_length_226_cov_5.620915_g44954_i0 PRJNA788929 45615 226 5.620915 12.7032679 Chlorobium phaeovibrioides 1094 Bacteria Bacteria 117 7.03e-22   NTclustered gi|470481662|ref|NR_076487.1| 1094 g44954 i0 79.545 31.3008849557522 176 27 75 8 24 192 226 399 Chlorobium phaeovibrioides strain DSM 265 23S ribosomal RNA gene, complete sequence blastn 7074 117 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobium Chlorobium phaeovibrioides
26927154 26927154 PRJNA788929_P_NODE_38762_length_249_cov_0.875000_g38101_i0 PRJNA788929 38762 249 0.875 2.17875 Chlorobiota bacterium 2268192 Bacteria Bacteria 48.9 5.45e-5   NR NOZ45590.1 2268192 g38101 i0 43.8 0.578313253012048 48 27 57.8 0 247 104 68 115 NOZ45590.1 hypothetical protein [Chlorobiota bacterium] diamond 144 48.9 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;