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contig_metadata

6 rows where bioproject = "PRJNA788929", tax_clade = "CRuMs" and tax_superkingdom = "Eukaryota"

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tax_superkingdom 1

  • Eukaryota · 6 ✖

tax_clade 1

  • CRuMs · 6 ✖

bioproject 1

  • PRJNA788929 · 6 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7592462 7592462 PRJNA788929_P_NODE_43166_length_238_cov_11.006061_g42505_i0 PRJNA788929 43166 238 11.006061 26.19442518 Collodictyonidae 190322 Root_unresolved Root_unresolved 137 5.74e-28   NTclustered gi|1200177733|gb|MF039367.1| 190325 g42505 i0 95.402 35.5294117647059 87 3 37 1 1 87 4845 4760 Collodictyon triciliatum isolate C_Arungen 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 8456 137 1 Eukaryota CRuMs         Collodictyonidae Collodictyon Collodictyon triciliatum
10973796 10973796 PRJNA788929_P_NODE_9949_length_568_cov_52.888889_g9296_i0 PRJNA788929 9949 568 52.888889 300.40888952 Diphylleia rotans 190327 Root_unresolved Root_unresolved 985 0   NTclustered gi|1200177731|gb|MF039365.1| 190327 g9296 i0 99.266 32.4225352112676 545 4 96 0 1 545 5054 4510 Diphylleia rotans isolate D_NIES3764 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 18416 985 1 Eukaryota CRuMs         Collodictyonidae Diphylleia Diphylleia rotans
12248712 12248712 PRJNA788929_P_NODE_18330_length_385_cov_35.102564_g17670_i0 PRJNA788929 18330 385 35.102564 135.1448714 Diphylleia rotans 190327 Root_unresolved Root_unresolved 97.1 1.67e-15   NTclustered gi|1200177731|gb|MF039365.1| 190327 g17670 i0 92.537 18.1558441558442 67 5 17 0 138 204 4319 4253 Diphylleia rotans isolate D_NIES3764 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 6990 97.1 1 Eukaryota CRuMs         Collodictyonidae Diphylleia Diphylleia rotans
18620796 18620796 PRJNA788929_P_NODE_25515_length_316_cov_30.641975_g24854_i0 PRJNA788929 25515 316 30.641975 96.828641 Diphylleia rotans 190327 Root_unresolved Root_unresolved 169 2.8199999999999997e-37   NTclustered gi|1200177731|gb|MF039365.1| 190327 g24854 i0 93.043 74.9367088607595 115 8 53 0 24 138 4721 4835 Diphylleia rotans isolate D_NIES3764 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 23680 169 1 Eukaryota CRuMs         Collodictyonidae Diphylleia Diphylleia rotans
19896428 19896428 PRJNA788929_P_NODE_4556_length_943_cov_268.141379_g4023_i0 PRJNA788929 4556 943 268.141379 2528.57320397 Collodictyon triciliatum 190325 Root_unresolved Root_unresolved 178 1.51e-39   NTclustered gi|1200177733|gb|MF039367.1| 190325 g4023 i0 92.742 13.7656415694592 124 7 22 2 566 688 4765 4887 Collodictyon triciliatum isolate C_Arungen 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 12981 178 1 Eukaryota CRuMs         Collodictyonidae Collodictyon Collodictyon triciliatum
23721979 23721979 PRJNA788929_P_NODE_17779_length_392_cov_13.705329_g17119_i0 PRJNA788929 17779 392 13.705329 53.72488968 Diphylleia rotans 190327 Root_unresolved Root_unresolved 682 0   NTclustered gi|1200177731|gb|MF039365.1| 190327 g17119 i0 100 46.9285714285714 369 0 94 0 1 369 3045 2677 Diphylleia rotans isolate D_NIES3764 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 18396 682 1 Eukaryota CRuMs         Collodictyonidae Diphylleia Diphylleia rotans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;