RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA788929", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Altimarinota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Candidatus Altimarinota · 3 ✖

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA788929 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13968026 13968026 PRJNA788929_P_NODE_12151_length_498_cov_37.054118_g11494_i0 PRJNA788929 12151 498 37.054118 184.52950764 Bacteria 2 Bacteria Bacteria 595 1.7899999999999994e-165   NTclustered gi|1769783243|gb|CP042461.1| 1862133 g11494 i0 89.518 110.034136546185 477 41 95 7 27 498 1251553 1251081 Candidatus Gracilibacteria bacterium 28_42_T64 chromosome, complete genome blastn 54797 601 0.990016638935108 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium 28_42_T64
29043383 29043383 PRJNA788929_P_NODE_24528_length_324_cov_3.581673_g23867_i0 PRJNA788929 24528 324 3.581673 11.60462052 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 111 2.13e-29   NR MDP5038850.1 2044595 g23867 i0 78.9 1.40740740740741 76 16 70.4 0 230 3 1 76 MDP5038850.1 30S ribosomal protein S20 [Candidatus Altimarinota bacterium] diamond 456 111 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
30338520 30338520 PRJNA788929_P_NODE_38092_length_250_cov_11.937853_g37431_i0 PRJNA788929 38092 250 11.937853 29.8446325 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 67 4.22e-11   NR MBW7954936.1 2044595 g37431 i0 53.7 0.804 67 30 79.2 1 50 247 1 67 MBW7954936.1 16S rRNA (uracil(1498)-N(3))-methyltransferase [Candidatus Altimarinota bacterium] diamond 201 67 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;