RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA788929", tax_clade = "Apusozoa" and tax_superkingdom = "Eukaryota"

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analysis 2

tax_superkingdom 1

  • Eukaryota · 3 ✖

tax_clade 1

  • Apusozoa · 3 ✖

bioproject 1

  • PRJNA788929 · 3 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23722468 23722468 PRJNA788929_P_NODE_50279_length_196_cov_8.455285_g49618_i0 PRJNA788929 50279 196 8.455285 16.5723586 Thecamonas trahens 529818 Root_unresolved Root_unresolved 52.8 0.017   NTclustered gi|761380055|ref|NC_026452.1| 529818 g49618 i0 100 0.142857142857143 28 0 14 0 139 166 256 229 Thecamonas trahens strain ATCC 50062 mitochondrion, complete genome blastn 28 52.8 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
27685860 27685860 PRJNA788929_P_NODE_3364_length_1128_cov_58.831280_g2953_i0 PRJNA788929 3364 1128 58.83128 663.6168384 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 161 1.86e-42   NR XP_013762496.1 461836 g2953 i0 39.3 0.582446808510638 219 127 57.2 4 183 827 107 323 XP_013762496.1 SMS-3 protein [Thecamonas trahens ATCC 50062] diamond 657 161 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
32654860 32654860 PRJNA788929_P_NODE_1340_length_1787_cov_21.686114_g1166_i0 PRJNA788929 1340 1787 21.686114 387.53085718 root 1 Root_unresolved Root_unresolved 50.8 0.0258   NR XP_013757898.1 461836 g1166 i0 28.1 0.345831001678791 114 70 18 4 544 864 3097 3205 XP_013757898.1 uncharacterized protein AMSG_05495 [Thecamonas trahens ATCC 50062] diamond 618 50.8 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;