RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA788929", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 6 ✖

tax_clade 1

  • Amoebozoa · 6 ✖

bioproject 1

  • PRJNA788929 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7147888 7147888 PRJNA788929_P_NODE_32826_length_273_cov_8.020000_g32165_i0 PRJNA788929 32826 273 8.02 21.8946 Tubulinea group 04 sp. PPD16 1215999 Tubulinea other_Eukaryota 455 1.6300000000000002e-123   NTclustered gi|399764279|gb|JQ271790.1| 1215999 g32165 i0 99.206 13.0842490842491 252 2 92 0 1 252 514 263 Tubulinea group 04 sp. PPD16 18S ribosomal RNA gene, partial sequence blastn 3572 455 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea group 04 sp. PPD16
10973475 10973475 PRJNA788929_P_NODE_37349_length_252_cov_32.122905_g36688_i0 PRJNA788929 37349 252 32.122905 80.9497206 Paraflabellula hoguae 136459 Tubulinea other_Eukaryota 281 2.68e-71   NTclustered gi|145386791|gb|EF216916.1| 136459 g36688 i0 89.908 20.6388888888889 218 22 87 0 34 251 144 361 Paraflabellula hoguae 28S large subunit ribosomal RNA gene, partial sequence blastn 5201 281 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Paraflabellula Paraflabellula hoguae
13523332 13523332 PRJNA788929_P_NODE_44151_length_233_cov_9.612500_g43490_i0 PRJNA788929 44151 233 9.6125 22.397125 Spumochlamys bryora 675832 Tubulinea other_Eukaryota 346 8.54e-91   NTclustered gi|259595677|gb|FJ705341.1| 675832 g43490 i0 96.667 1.80257510729614 210 3 90 1 24 233 1626 1831 Spumochlamys bryora clone 1901 18S ribosomal RNA gene, partial sequence blastn 420 346 1 Eukaryota Amoebozoa   Tubulinea Corycida   Microchlamyiidae Spumochlamys Spumochlamys bryora
19066093 19066093 PRJNA788929_P_NODE_50035_length_198_cov_5.648000_g49374_i0 PRJNA788929 50035 198 5.648 11.18304 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 246 7.34e-61   NTclustered gi|399764264|gb|JQ271775.1| 1215986 g49374 i0 91.667 43.7222222222222 180 11 89 4 1 177 1510 1332 Tubulinea group 02 sp. 1HFKJ 18S ribosomal RNA gene, partial sequence blastn 8657 246 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea group 02 sp. 1HFKJ
23722246 23722246 PRJNA788929_P_NODE_34859_length_263_cov_16.726316_g34198_i0 PRJNA788929 34859 263 16.726316 43.99021108 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 243 1.33e-59   NTclustered gi|511487963|gb|JX898537.1| 1260765 g34198 i0 85.185 13.0760456273764 243 29 91 7 24 263 15 253 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 3439 243 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba
30916185 30916185 PRJNA788929_P_NODE_1454_length_1722_cov_39.215282_g1262_i0 PRJNA788929 1454 1722 39.215282 675.28715604 root 1 Root_unresolved Root_unresolved 348 1.4099999999999998e-110   NR ABD46557.1 5778 g1262 i0 40.4 5.77003484320557 460 257 79.3 6 158 1522 1 448 ABD46557.1 sodium:galactoside symporter-like protein, partial [Vermamoeba vermiformis] diamond 9936 348 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;