RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA785164" and tax_phylum = "Candidatus Parcubacteria"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Parcubacteria · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA785164 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13519547 13519547 PRJNA785164_P_NODE_20251_length_424_cov_2.227920_g19786_i0 PRJNA785164 20251 424 2.22792 9.4463808 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 111 1.09e-26   NR RJQ26094.1 2762014 g19786 i0 43.5 2.04481132075472 147 75 99.1 5 4 423 61 206 RJQ26094.1 MAG: hypothetical protein C4577_04130, partial [Candidatus Parcubacteria bacterium] diamond 867 111 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium
29516650 29516650 PRJNA785164_P_NODE_47350_length_261_cov_1.808511_g46885_i0 PRJNA785164 47350 261 1.808511 4.72021371 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 148 1.8e-42   NR MEN9604596.1 2762014 g46885 i0 79.8 0.96551724137931 84 17 96.6 0 258 7 126 209 MEN9604596.1 hypothetical protein [Candidatus Parcubacteria bacterium] diamond 252 148 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium
30843656 30843656 PRJNA785164_P_NODE_60474_length_242_cov_1.420118_g60009_i0 PRJNA785164 60474 242 1.420118 3.43668556 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 117 1.97e-30   NR MBC7766872.1 2762014 g60009 i0 86.3 0.991735537190083 80 11 99.2 0 242 3 145 224 MBC7766872.1 hypothetical protein [Candidatus Parcubacteria bacterium] diamond 240 117 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium
32086038 32086038 PRJNA785164_P_NODE_21018_length_414_cov_1.255132_g20553_i0 PRJNA785164 21018 414 1.255132 5.19624648 Bacteria 2 Bacteria Bacteria 123 2.26e-30   NR ETB63710.1 1394712 g20553 i0 61.3 2.17391304347826 106 41 76.8 0 97 414 92 197 ETB63710.1 MAG: hypothetical protein O210_OD1C00001G0172 [Parcubacteria bacterium RAAC4_OD1_1] diamond 900 123 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Parcubacteria bacterium RAAC4_OD1_1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;