RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA785164", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

  • Metazoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA785164 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28001418 28001418 PRJNA785164_P_NODE_43965_length_272_cov_1.025126_g43500_i0 PRJNA785164 43965 272 1.025126 2.78834272 Pristionchus fissidentatus 1538716 Nematoda Nematoda 42.7 0.0493   NR GMT28504.1 1538716 g43500 i0 48.8 0.452205882352941 41 18 43 2 265 149 123 162 GMT28504.1 hypothetical protein PFISCL1PPCAC_19801, partial [Pristionchus fissidentatus] diamond 123 42.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus fissidentatus
29336633 29336633 PRJNA785164_P_NODE_59669_length_243_cov_0.905882_g59204_i0 PRJNA785164 59669 243 0.905882 2.20129326 Rhabditida 6236 Nematoda Nematoda 87.8 4.89e-18   NR PIO71852.1 45464 g59204 i0 57.9 2.83950617283951 76 25 93.8 2 14 241 383 451 PIO71852.1 kinase domain protein [Teladorsagia circumcincta] diamond 690 87.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Teladorsagia Teladorsagia circumcincta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;