RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA785164", tax_kingdom = "Bacillati" and tax_phylum = "Armatimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA785164 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28538214 28538214 PRJNA785164_P_NODE_55967_length_246_cov_2.994220_g55502_i0 PRJNA785164 55967 246 2.99422 7.3657812 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 42 0.0254   NR QYK53631.1 2682144 g55502 i0 36.4 0.804878048780488 66 40 78 1 23 214 40 105 QYK53631.1 MAG: ankyrin repeat domain-containing protein [Fimbriimonadaceae bacterium] diamond 198 42 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium
31231791 31231791 PRJNA785164_P_NODE_48555_length_258_cov_1.167568_g48090_i0 PRJNA785164 48555 258 1.167568 3.01232544 Bacillati 1783272 Bacteria Bacteria 53.1 2.49e-6   NR MBX7133800.1 2682144 g48090 i0 42.4 4.08139534883721 66 31 69.8 3 79 258 41 105 MBX7133800.1 endonuclease VII domain-containing protein [Fimbriimonadaceae bacterium] diamond 1053 53.5 0.992523364485981 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium
31444080 31444080 PRJNA785164_P_NODE_42676_length_276_cov_1.142857_g42211_i0 PRJNA785164 42676 276 1.142857 3.15428532 Armatimonadota bacterium 2033014 Bacteria Bacteria 57.8 6.46e-8   NR MBC8138138.1 2033014 g42211 i0 35.4 0.891304347826087 82 51 89.1 1 274 29 39 118 MBC8138138.1 hypothetical protein [Armatimonadota bacterium] diamond 246 57.8 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;