RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA785164", tax_clade = "core chlorophytes" and tax_kingdom = "Viridiplantae"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Viridiplantae · 2 ✖

tax_clade 1

  • core chlorophytes · 2 ✖

bioproject 1

  • PRJNA785164 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9694399 9694399 PRJNA785164_P_NODE_34488_length_309_cov_1.305085_g34023_i0 PRJNA785164 34488 309 1.305085 4.03271265 Coccomyxa subellipsoidea 248742 Plants Plants 429 1.14e-115   NTclustered gi|545374673|ref|XM_005651537.1| 574566 g34023 i0 91.857 72.915857605178 307 25 99 0 3 309 349 655 Coccomyxa subellipsoidea C-169 ribosomal protein S2 component of cytosolic 80S ribosome and 40S small subunit partial mRNA blastn 22531 429 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
31317577 31317577 PRJNA785164_P_NODE_60455_length_242_cov_1.526627_g59990_i0 PRJNA785164 60455 242 1.526627 3.69443734 Coccomyxa viridis 1274662 Plants Plants 42.4 0.0496   NR CAL5223337.1 1274662 g59990 i0 32.4 0.880165289256198 71 36 81.8 2 31 228 112 175 CAL5223337.1 g5838 [Coccomyxa viridis] diamond 213 42.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa viridis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;