RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA785164", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 4 ✖

bioproject 1

  • PRJNA785164 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26958523 26958523 PRJNA785164_P_NODE_29862_length_335_cov_1.232824_g29397_i0 PRJNA785164 29862 335 1.232824 4.1299604 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 79 1.01e-15   NR MBX9853930.1 2026741 g29397 i0 59.7 0.555223880597015 62 25 55.5 0 188 3 9 70 MBX9853930.1 N-acetylmuramoyl-L-alanine amidase [Gemmatimonadaceae bacterium] diamond 186 79 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
27306663 27306663 PRJNA785164_P_NODE_60303_length_242_cov_2.360947_g59838_i0 PRJNA785164 60303 242 2.360947 5.71349174 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 50.8 5.26e-5   NR HTE47308.1 2026741 g59838 i0 36.2 0.71900826446281 58 37 71.9 0 194 21 1367 1424 HTE47308.1 Ig-like domain-containing protein [Gemmatimonadaceae bacterium] diamond 174 50.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
28190450 28190450 PRJNA785164_P_NODE_46046_length_265_cov_1.604167_g45581_i0 PRJNA785164 46046 265 1.604167 4.25104255 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 76.3 3.23e-14   NR HXF23647.1 2026741 g45581 i0 46.8 2.66037735849057 79 42 89.4 0 3 239 204 282 HXF23647.1 serine/threonine-protein kinase [Gemmatimonadaceae bacterium] diamond 705 76.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
29169624 29169624 PRJNA785164_P_NODE_53709_length_249_cov_0.875000_g53244_i0 PRJNA785164 53709 249 0.875 2.17875 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 70.1 9.36e-12   NR MBK8246447.1 2026742 g53244 i0 51.3 1.86746987951807 78 37 94 1 249 16 426 502 MBK8246447.1 hypothetical protein [Gemmatimonadota bacterium] diamond 465 70.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;