RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA785164", tax_clade = "FCB group" and tax_phylum = "Chlorobiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA785164 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27243295 27243295 PRJNA785164_P_NODE_59783_length_243_cov_0.905882_g59318_i0 PRJNA785164 59783 243 0.905882 2.20129326 Chlorobium sp. 1095 Bacteria Bacteria 43.9 0.014   NR MBV5330352.1 1095 g59318 i0 36.8 0.839506172839506 68 40 81.5 2 224 27 25 91 MBV5330352.1 site-specific integrase [Chlorobium sp.] diamond 204 43.9 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobium Chlorobium sp.
28380106 28380106 PRJNA785164_P_NODE_57346_length_245_cov_1.011628_g56881_i0 PRJNA785164 57346 245 1.011628 2.4784886 [Candidatus Thermochlorobacteriaceae] bacterium GBChlB 1519464 Bacteria Bacteria 115 7.249999999999998e-30   NR KER09693.1 1519464 g56881 i0 66.2 0.942857142857143 77 26 94.3 0 233 3 60 136 KER09693.1 MAG: glycosyl hydrolase [[Candidatus Thermochlorobacteriaceae] bacterium GBChlB] diamond 231 115 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chloroherpetonaceae   [Candidatus Thermochlorobacteriaceae] bacterium GBChlB

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;